Data files

Collected PDB-files of homology models of alpha-tubulin, all based on T. thermophila tubulin PDB-ID 5ubq, chain A:

Includes models of the following dinitroaniline herbicide sensitive species (UniProt ID in brackets):

• C. reinhardtii (P09204)
• E. indica (O22347)
• L. donovani (I3W8N6)
• L. infantum (E9AGJ8)
• L. major (Q4QGC5)
• P. falciparum (P14642)
• S. viridis (Q65C79)
• T. brucei (Q4GYY5)
• T. cruzi (Q27352)
• T. gondii (P10873)
• Z. mays (P14640)

Includes models of the following dinitroaniline ...

This archive contains all results of the PIPSA analysis run in zipped form. It contains the following subfolders:

• apbs: Computed electrostatic potential grids, all log files and similarity matrices for the full protein and all sites.
• pdb2pqr: PQR files: conversion results after processing uploaded PDB files with pdb2pqr
• pdbs: Original uploaded PDB files

The following sites have been analyzed (provided are site center (based on T. cruzi model, Ca of the residue) and the sphere radius):

Blume ...

Clustal Omega multiple sequence alignment result for selected alpha-tubulins in FASTA format with gaps. Species and corresponding Uniprot identifiers can be found in the FASTA file.

The following species (Uniprot ID, dinitroaniline-sensitive/resistant) were considered:

• Trypanosoma cruzi (Q27352, sensitive)
• Trypanosoma brucei brucei (Q4GYY5, sensitive)
• Leishmania infantum (E9AGJ8, sensitive)
• Leishmania donovani (I3W8N6, sensitive)
• Leishmania major (Q4QGC5, sensitive)
• Toxoplasma gondii ...

Clustal Omega multiple sequence alignment result for selected beta-tubulins in FASTA format with gaps. Species and corresponding Uniprot identifiers can be found in the FASTA file.

The following species (Uniprot ID, dinitroaniline-sensitive/resistant) were considered:

• Trypanosoma cruzi (Q8STF3, sensitive)
• Trypanosoma brucei brucei (Q4GYY6, sensitive)
• Leishmania infantum (A4HZJ3, sensitive)
• Leishmania donovani (I3W8N7, sensitive)
• Leishmania major (Q4QBZ6, sensitive)
• Toxoplasma gondii ...

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing