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Creator: Theresa Kouril
Submitter: Theresa Kouril
Creator: Theresa Kouril
Submitter: Theresa Kouril
The first sheet in this excel file is a Table that collects the standard Gibbs energies of formation (from the elements) of a large number of chemical species that are relevant for metabolism. It obtained these from a substantial number of sources, including Thauer et al and Alberty, as indicated at the bottom of the first sheet of the Table. Following Alberty, (2006) the Table also computes the further transformed Gibbs energies of formation, under the standard conditions also used by Alberty, ...
Creator: Hans V. Westerhoff
Submitter: Hans V. Westerhoff
Protein measurement used to normalised the oxygen consumption flux measured on an Oroboros oxygraph.
Creators: Christoff Odendaal, Barbara Bakker, Ligia Akemi Kiyuna, Albert Gerding; Nicolette Huijkman; Marcel Vieira-Lara; Anne-Claire Martines
Submitter: Christoff Odendaal
Measured in an Oroboros oxygraph.
Creators: Christoff Odendaal, Barbara Bakker, Ligia Akemi Kiyuna, Albert Gerding; Nicolette Huijkman; Marcel Vieira-Lara; Anne-Claire Martines
Submitter: Christoff Odendaal
Proteomics from MCADD and control individuals' fibroblasts.
Creators: Christoff Odendaal, Barbara Bakker, Emmalie Jager, Terry G.J. Derks, Karin Wolters; Anne-Claire Martines
Submitter: Christoff Odendaal
Content:
- Compiled 15 columns annotation of P. cordatum (Dougan et al. 2022)
- Summary of predicted unknown proteins of P. cordatum
- Calculations of predicted unknown proteins of P. cordatum
Tab color: annotation, purple; unknowns, green
Creators: None
Submitter: Jana Kalvelage
- Calculations of predictions of all identified proteins of P. cordatum
- Calculations of fold-changes of all identified proteins (cell vs. nuclei fraction) of P. cordatum
- Calculations of predictions of proteins of unknown function of_ P. cordatum_
- Calculations of fold-changes of unknowns (cell vs. nuclei fraction) of P. cordatum
Tab color: all identified proteins, purple; unkowns, green
Creators: None
Submitter: Jana Kalvelage
Content:
- Nuclear protein fractions: NSP, NMP and NTP R1-R3 (Peptide counts)
- Summary nuclear proteins geLC
- Cellular protein fractions: CSP, CMP R1-R3 (Peptide counts)
- Summary cellular proteins geLC
- Summary nuclear protein fractions NSP R1-R3 (iBAQs)
- Summary cellular protein fractions CSP R1-R3 (iBAQs)
- 15 columns annotation
- Final summary of protein data
- Prediction results
- Annotation (biological processes and categories)
Tab color: raw data, green; summarized data, orange; final ...
Creators: None
Submitter: Jana Kalvelage
- Summary of functional categorization of all identified proteins of P. cordatum
- Calculations of general functions (Fig. 5, left panel)
- Calculations of nuclear functions (Fig. 5, right panel)
- Categories in separate sheets
Tab color: Summarized data, purple; calculations, organge; functional categories, green
Creators: None
Submitter: Jana Kalvelage
- Summary of nuclear proteins
- Separate sheets of nuclear processes (MBNP_Histones, DNA replication, DNA repair, RNA processing (rRNA and mRNA processing), transcription, import and export, ubiquitylation, proteasome, biogenesis ribosomes)
- Ribosomes (category translation)
Tab color: Summary, purple; nuclear processes, green; ribosomes, orange
Creators: None
Submitter: Jana Kalvelage
Creators: None
Submitter: Lars Wöhlbrand
Prepared (sub-)cellular fractions were separated by gradient SDS-PAGE and entire sample lanes cut into pieces prior to in-gel digest and nanoLC separation coulpled to iontrap MS/MS detection.
Creators: None
Submitter: Lars Wöhlbrand
Supplementary movie of the distribution of nuclear pores in the nuclear envelope of P. cordatum
Creators: None
Submitter: Jana Kalvelage
Movie of the chromosomal packing in the nucleus of P. cordatum MPEG format (mp4)
Creators: None
Submitter: Jana Kalvelage
- Amira raw data of nuclear structures of P. cordatum
- Volume calculations of nuclear structures of_ P. cordatum _
Creators: None
Submitter: Jana Kalvelage
- raw data tif-file, stacked image for 3D reconstruction of the nucleus of P. cordatum
Creators: None
Submitter: Jana Kalvelage
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian