Selected Cell
Cell:
Value:
Outline
1P_vulgatus_ATCC_8482
2Pathways
3Transporter
4Sus
5CDW&TCC
6ATPcalculation
7Yieldcalculations
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Tab | Name | Contents | |||||||
1 | 1P_vulgatus_ATCC_8482 | Genome of P. vulgatus ATCC 8482 | |||||||
2 | 2Pathways | Enzyme of the specific pathways and respiration chain with peptide counts | |||||||
3 | 3Transporter | Genome based transporter with the specific peptide count | |||||||
4 | 4Sus | Sus-like system-related proteins and glycoside hydrolase family proteins | |||||||
5 | 5CDW&TCC | Cell dry weight and total cell count for all 14 substrates | |||||||
6 | 6ATPcalculation | ATP calculation exemplarily for ODmax | |||||||
7 | 7Yieldcalculations | Calculation of product yield and biomass yield based on CDW and TCC | |||||||
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Locus_Tag | Old_Tag | Start | Stop | Length AA | Strand | Gene_Name | EC_Number | Function | |||||
BVU_RS00005 | BVU_0001 | 10 | 1416 | 468 | dnaA | chromosomal replication initiator protein DnaA | |||||||
BVU_RS00010 | BVU_0002 | 1501 | 2241 | 246 | c | BVU_RS00010 | NADPH-dependent oxidoreductase | ||||||
BVU_RS00015 | BVU_0003 | 2585 | 5131 | 848 | BVU_RS00015 | 1.17.4.1 | adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | ||||||
BVU_RS00020 | BVU_0004 | 5224 | 8196 | 990 | c | BVU_RS00020 | membrane protein | ||||||
BVU_RS00025 | BVU_0005 | 8358 | 8726 | 122 | folB | 4.1.2.25 | dihydroneopterin aldolase | ||||||
BVU_RS00030 | BVU_0006 | 8873 | 9754 | 293 | c | BVU_RS00030 | radical SAM protein | ||||||
BVU_RS00035 | BVU_0007 | 9842 | 10867 | 341 | c | BVU_RS00035 | glycosyltransferase family 2 protein | ||||||
BVU_RS00040 | BVU_0008 | 10903 | 12219 | 438 | c | mtaB | tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB | ||||||
BVU_RS00045 | BVU_0009 | 12325 | 13998 | 557 | BVU_RS00045 | long-chain fatty acid--CoA ligase | |||||||
BVU_RS00050 | 14159 | 14359 | 66 | BVU_RS00050 | hypothetical protein | ||||||||
BVU_RS00055 | BVU_0010 | 14514 | 15206 | 230 | BVU_RS00055 | hypothetical protein | |||||||
BVU_RS00060 | BVU_0011 | 15276 | 15719 | 147 | c | rplI | 50S ribosomal protein L9 | ||||||
BVU_RS00065 | BVU_0012 | 15735 | 16004 | 89 | c | rpsR | 30S ribosomal protein S18 | ||||||
BVU_RS00070 | BVU_0013 | 16007 | 16351 | 114 | c | rpsF | 30S ribosomal protein S6 | ||||||
BVU_RS00075 | BVU_0014 | 16561 | 17007 | 148 | BVU_RS00075 | MarR family transcriptional regulator | |||||||
BVU_RS00080 | 17116 | 17298 | 60 | BVU_RS00080 | hypothetical protein | ||||||||
BVU_RS00085 | BVU_0015 | 17374 | 18072 | 232 | c | BVU_RS00085 | response regulator transcription factor | ||||||
BVU_RS00090 | BVU_0016 | 18074 | 19642 | 522 | c | BVU_RS00090 | HAMP domain-containing histidine kinase | ||||||
BVU_RS00095 | BVU_0017 | 19905 | 22064 | 719 | c | BVU_RS00095 | elongation factor G | ||||||
BVU_RS00100 | BVU_0018 | 22250 | 23380 | 376 | hemW | radical SAM family heme chaperone HemW | |||||||
BVU_RS00105 | 23518 | 23709 | 63 | BVU_RS00105 | hypothetical protein | ||||||||
BVU_RS00110 | BVU_0019 | 23753 | >24991 | BVU_RS00110 | carboxypeptidase-like regulatory domain-containing protein | ||||||||
BVU_RS00115 | BVU_0020 | 25013 | 25918 | 301 | c | BVU_RS00115 | IS982 family transposase | ||||||
BVU_RS00120 | BVU_0021 | <26027 | 27442 | BVU_RS00120 | TonB-dependent receptor | ||||||||
BVU_RS00125 | BVU_0022 | 27449 | 28435 | 328 | BVU_RS00125 | DUF4249 domain-containing protein | |||||||
BVU_RS00130 | BVU_0023 | 28548 | 29114 | 188 | BVU_RS00130 | RNA polymerase sigma-70 factor | |||||||
BVU_RS00135 | BVU_0024 | 29170 | 29577 | 135 | BVU_RS00135 | hypothetical protein | |||||||
BVU_RS00140 | BVU_0025 | 29604 | 30494 | 296 | BVU_RS00140 | FecR domain-containing protein | |||||||
BVU_RS00145 | BVU_0026 | 30502 | 33177 | 891 | BVU_RS00145 | carboxypeptidase-like regulatory domain-containing protein | |||||||
BVU_RS00150 | BVU_0027 | 33184 | 34215 | 343 | BVU_RS00150 | DUF4249 domain-containing protein | |||||||
BVU_RS00155 | BVU_0028 | 34247 | 36184 | 645 | c | BVU_RS00155 | 9-O-acetylesterase | ||||||
BVU_RS00160 | BVU_0029 | 36212 | 38257 | 681 | c | BVU_RS00160 | alpha-glucuronidase | ||||||
BVU_RS00165 | BVU_0030 | 38254 | 40848 | 864 | c | BVU_RS00165 | glycosyl hydrolase 115 family protein | ||||||
BVU_RS00170 | BVU_0031 | 40861 | 42444 | 527 | c | BVU_RS00170 | glycoside hydrolase 43 family protein | ||||||
BVU_RS00175 | BVU_0032 | 42453 | 44960 | 835 | c | BVU_RS00175 | family 43 glycosylhydrolase | ||||||
BVU_RS00180 | BVU_0033 | 45197 | 49249 | 1350 | BVU_RS00180 | response regulator | |||||||
BVU_RS00185 | BVU_0034 | 49721 | 51334 | 537 | c | BVU_RS00185 | IS66 family transposase | ||||||
BVU_RS00190 | BVU_0035 | 51403 | 51912 | 169 | c | tnpB | IS66 family insertion sequence element accessory protein TnpB | ||||||
BVU_RS00195 | BVU_0037 | 52180 | 54114 | 644 | c | BVU_RS00195 | RagB/SusD family nutrient uptake outer membrane protein | ||||||
BVU_RS00200 | BVU_0038 | 54129 | 57200 | 1023 | c | BVU_RS00200 | TonB-dependent receptor | ||||||
BVU_RS00205 | BVU_0039 | 57242 | 58978 | 578 | c | BVU_RS00205 | glycoside hydrolase family 43 protein | ||||||
BVU_RS00210 | BVU_0040 | 59328 | 60299 | 323 | c | BVU_RS00210 | glycoside hydrolase family 43 protein | ||||||
BVU_RS00215 | BVU_0041 | 60312 | 61433 | 373 | c | BVU_RS00215 | endo-1,4-beta-xylanase | ||||||
BVU_RS00220 | BVU_0042 | 61646 | 62611 | 321 | BVU_RS00220 | IS110 family transposase | |||||||
BVU_RS00225 | BVU_0043 | 62782 | 64275 | 497 | c | BVU_RS00225 | glycoside-pentoside-hexuronide (GPH):cation symporter | ||||||
BVU_RS00230 | BVU_0044 | 64603 | 65394 | 263 | c | BVU_RS00230 | glycoside hydrolase family 16 protein | ||||||
BVU_RS00235 | BVU_0045 | 65510 | 66415 | 301 | BVU_RS00235 | IS982 family transposase | |||||||
BVU_RS00240 | BVU_0046 | 66523 | 67911 | 462 | c | glmM | 5.4.2.10 | phosphoglucosamine mutase | |||||
BVU_RS00245 | BVU_0047 | 67908 | 68543 | 211 | c | BVU_RS00245 | DUF4827 domain-containing protein | ||||||
BVU_RS00250 | BVU_0048 | 68626 | 69666 | 346 | c | BVU_RS00250 | bifunctional oligoribonuclease/PAP phosphatase NrnA | ||||||
BVU_RS00255 | BVU_0049 | 69716 | 71635 | 639 | c | BVU_RS00255 | competence protein ComEC family protein | ||||||
BVU_RS00260 | BVU_0050 | 71682 | 72335 | 217 | c | rpe | 5.1.3.1 | ribulose-phosphate 3-epimerase | |||||
BVU_RS00265 | BVU_0051 | 72411 | 73706 | 431 | c | BVU_RS00265 | outer membrane beta-barrel protein | ||||||
BVU_RS00270 | BVU_0052 | 73709 | 74251 | 180 | c | BVU_RS00270 | sigma-70 family RNA polymerase sigma factor | ||||||
BVU_RS00275 | BVU_0053 | 74409 | 75191 | 260 | BVU_RS00275 | NigD-like protein | |||||||
BVU_RS00280 | BVU_0054 | 75264 | 76238 | 324 | c | fmt | 2.1.2.9 | methionyl-tRNA formyltransferase | |||||
BVU_RS00285 | BVU_0055 | 76252 | 78054 | 600 | c | BVU_RS00285 | chloride channel protein | ||||||
BVU_RS00290 | BVU_0056 | 78063 | 78638 | 191 | c | BVU_RS00290 | 2.7.7.87 | L-threonylcarbamoyladenylate synthase | |||||
BVU_RS00295 | BVU_0057 | 78805 | 79968 | 387 | c | nagA | 3.5.1.25 | N-acetylglucosamine-6-phosphate deacetylase | |||||
BVU_RS00300 | BVU_0058 | 80059 | 83235 | 1058 | c | BVU_RS00300 | efflux RND transporter permease subunit | ||||||
BVU_RS00305 | BVU_0059 | 83232 | 84719 | 495 | c | BVU_RS00305 | TolC family protein | ||||||
BVU_RS00310 | BVU_0060 | 84706 | 87786 | 1026 | c | BVU_RS00310 | efflux RND transporter permease subunit | ||||||
BVU_RS00315 | BVU_0061 | 87791 | 88858 | 355 | c | BVU_RS00315 | efflux RND transporter periplasmic adaptor subunit | ||||||
BVU_RS00320 | BVU_0062 | 88911 | 90560 | 549 | c | BVU_RS00320 | O-antigen ligase family protein | ||||||
BVU_RS00325 | BVU_0063 | 90563 | 92074 | 503 | c | BVU_RS00325 | transglutaminase-like domain-containing protein | ||||||
BVU_RS00330 | BVU_0064 | 92076 | 92978 | 300 | c | lepB | 3.4.21.89 | signal peptidase I | |||||
BVU_RS00335 | BVU_0065 | 92987 | 94891 | 634 | c | BVU_RS00335 | hypothetical protein | ||||||
BVU_RS00340 | BVU_0066 | 95171 | 96265 | 364 | c | BVU_RS00340 | 6-bladed beta-propeller | ||||||
BVU_RS21125 | 96354 | 96602 | 82 | c | BVU_RS21125 | NVEALA domain-containing protein | |||||||
BVU_RS00345 | BVU_0068 | 96844 | 97710 | 288 | c | BVU_RS00345 | DUF1573 domain-containing protein | ||||||
BVU_RS00350 | 97714 | 97935 | 73 | c | BVU_RS00350 | NVEALA domain-containing protein | |||||||
BVU_RS00355 | BVU_0069 | 98189 | 99187 | 332 | BVU_RS00355 | winged helix-turn-helix domain-containing protein | |||||||
BVU_RS00360 | BVU_0070 | 99951 | 101030 | 359 | c | BVU_RS00360 | BF3164 family lipoprotein | ||||||
BVU_RS00365 | BVU_0071 | 101327 | 102115 | 262 | BVU_RS00365 | DUF108 domain-containing protein | |||||||
BVU_RS00370 | BVU_0072 | 102098 | 102982 | 294 | c | BVU_RS00370 | dihydrofolate reductase | ||||||
BVU_RS00375 | BVU_0073 | 103089 | 103871 | 260 | BVU_RS00375 | TerB family tellurite resistance protein | |||||||
BVU_RS00380 | BVU_0074 | 103946 | 105514 | 522 | c | BVU_RS00380 | peptide chain release factor 3 | ||||||
BVU_RS00385 | BVU_0075 | 105521 | 106378 | 285 | c | rfbD | 1.1.1.133 | dTDP-4-dehydrorhamnose reductase | |||||
BVU_RS00390 | BVU_0076 | 106393 | 106935 | 180 | c | BVU_RS00390 | DUF4924 family protein | ||||||
BVU_RS00395 | BVU_0077 | 107007 | 107666 | 219 | c | BVU_RS00395 | LysE family translocator | ||||||
BVU_RS00400 | BVU_0078 | 107817 | 111521 | 1234 | purL | 6.3.5.3 | phosphoribosylformylglycinamidine synthase | ||||||
BVU_RS00405 | BVU_0079 | 111599 | 115615 | 1338 | BVU_RS00405 | hybrid sensor histidine kinase/response regulator transcription factor | |||||||
BVU_RS00410 | BVU_0080 | 115620 | 116168 | 182 | BVU_RS00410 | chromate transporter | |||||||
BVU_RS00415 | BVU_0081 | 116165 | 116737 | 190 | BVU_RS00415 | chromate transporter | |||||||
BVU_RS00420 | BVU_0082 | 117024 | 118523 | 499 | c | BVU_RS00420 | family 10 glycosylhydrolase | ||||||
BVU_RS00425 | BVU_0083 | 118605 | 121406 | 933 | uvrA | 3.1.25.- | excinuclease ABC subunit UvrA | ||||||
BVU_RS00430 | BVU_0084 | 121652 | 122683 | 343 | BVU_RS00430 | endonuclease/exonuclease/phosphatase family protein | |||||||
BVU_RS00435 | BVU_0085 | 122740 | 125046 | 768 | BVU_RS00435 | family 20 glycosylhydrolase | |||||||
BVU_RS00440 | BVU_0086 | 125156 | 125647 | 163 | c | BVU_RS00440 | hypothetical protein | ||||||
BVU_RS00445 | BVU_0087 | 125666 | 125887 | 73 | c | BVU_RS00445 | hypothetical protein | ||||||
BVU_RS00450 | BVU_0088 | 125874 | 127304 | 476 | c | BVU_RS00450 | carbon starvation protein A | ||||||
BVU_RS00455 | BVU_0089 | 127383 | 129062 | 559 | BVU_RS00455 | family 10 glycosylhydrolase | |||||||
BVU_RS00465 | BVU_0090 | 129411 | 130409 | 332 | c | BVU_RS00465 | virulence RhuM family protein | ||||||
BVU_RS00470 | BVU_0091 | 130412 | 131005 | 197 | c | BVU_RS00470 | hypothetical protein | ||||||
BVU_RS00475 | BVU_0092 | 132242 | 133411 | 389 | BVU_RS00475 | AIR synthase-related protein | |||||||
BVU_RS00480 | BVU_0094 | 133654 | 134769 | 371 | prfA | peptide chain release factor 1 | |||||||
BVU_RS00485 | BVU_0095 | 134806 | 135624 | 272 | pyrF | 4.1.1.23 | orotidine-5'-phosphate decarboxylase | ||||||
BVU_RS00490 | BVU_0096 | 135713 | 136948 | 411 | BVU_RS00490 | HD domain-containing protein | |||||||
BVU_RS00495 | BVU_0097 | 137081 | 138121 | 346 | lpxD | 2.3.1.191 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase |
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Accession | Locus | Locus_old | Name | EC_Number | Function-deposited genome | Ara | Frc | Fuc | Gal | Glc | GluA | Lac | Mal | Man | Rha | Sac | Xyn | Xylo | aCyclo | old name | newest name |
Glucose | |||||||||||||||||||||
ABR37919.1 | BVU_RS00975 | BVU_0191 | NagC | 2.7.1.2 | ROK family protein | 24.666667 | 29 | 31.666667 | 36 | 22.333333 | 27.666667 | 44.333333 | 46.666667 | 33 | 42.666667 | 24 | 31 | 37 | 21.666667 | ROK family transcriptional repressor, with glucokinase domain | |
ABR41711.1 | BVU_RS20600 | BVU_4109 | pgi | 5.3.1.9 | glucose-6-phosphate isomerase | 31 | 19 | 27 | 22.333333 | 29.666667 | 26 | 32.666667 | 30.333333 | 29.666667 | 33.666667 | 28.666667 | 33 | 36.666667 | 29.666667 | ||
ABR39945.1 | BVU_RS11505 | BVU_2286 | pfp/pfkA | 2.7.1.90 | diphosphate--fructose-6-phosphate 1-phosphotransferase | 88.666667 | 48 | 45.666667 | 60 | 38 | 57.333333 | 46.333333 | 52 | 68 | 78 | 73.333333 | 43 | 53 | 65.333333 | phosphofructokinase, 2.7.1.11, pfkA | |
ABR39352.1 | BVU_RS08495 | BVU_1671 | fbaA | 4.1.2.13 | class II fructose-1,6-bisphosphate aldolase | 135.33333 | 161.33333 | 117.66667 | 198 | 149 | 83 | 139 | 138.33333 | 153.33333 | 119.33333 | 147 | 103 | 137 | 107.66667 | fructose-bisphosphate aldolase [Phocaeicola vulgatus ATCC 8482] | |
ABR38176.1 | BVU_RS22130 | BVU_0466 | tpiA | 5.3.1.1 | triose-phosphate isomerase | 125.66667 | 149.66667 | 109 | 170.66667 | 139.66667 | 67 | 137.33333 | 126.33333 | 134 | 108.33333 | 131.66667 | 86 | 109.66667 | 98.333333 | ||
ABR41198.1 | BVU_RS18000 | BVU_3585 | gapA | 1.2.1.12/59 | type I glyceraldehyde-3-phosphate dehydrogenase | 256.33333 | 342.33333 | 326 | 529 | 342.66667 | 215.66667 | 302.66667 | 337 | 302.33333 | 295.33333 | 399 | 175.33333 | 276 | 250.66667 | glyceraldehyde 3-phosphate dehydrogenase | |
ABR39867.1 | BVU_RS11105 | BVU_2206 | pgk | 2.7.2.3 | phosphoglycerate kinase | 83.666667 | 100 | 83.666667 | 120.33333 | 91.333333 | 47.333333 | 104.33333 | 96.666667 | 93.666667 | 89.666667 | 82 | 71.666667 | 92.333333 | 74.666667 | ||
ABR39064.1 | BVU_RS06960 | BVU_1375 | gpmI | 5.4.2.12 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 49.666667 | 58 | 30.333333 | 51 | 52 | 20.666667 | 43 | 46.333333 | 50.333333 | 32 | 58 | 27.666667 | 43.666667 | 37 | ||
ABR40293.1 | BVU_RS13285 | BVU_2641 | eno | 4.2.1.11 | phosphopyruvate hydratase | 33 | 42.666667 | 13 | 58.333333 | 62 | 42.333333 | 37.666667 | 46.666667 | 36 | 28 | 37.666667 | 20.666667 | 37.666667 | 14.333333 | enolase | |
ABR38571.1 | BVU_RS04440 | BVU_0876 | pyk | 2.7.1.40 | pyruvate kinase | 18.666667 | 18.333333 | 13.333333 | 24.666667 | 15.666667 | 10 | 11 | 8 | 21.333333 | 11.333333 | 21 | 9.6666667 | 11.333333 | 14.333333 | ||
Pyruvate -> Phosphoenolpyruvate | |||||||||||||||||||||
ABR40984.1 | BVU_RS16880 | BVU_3358 | ppdK | 2.7.9.1 | pyruvate, phosphate dikinase | 0 | 0 | 18.333333 | 2.3333333 | 0 | 6 | 15 | 19.666667 | 4 | 82.333333 | 0 | 13.666667 | 11 | 0 | ||
Pyruvate -> Formate | |||||||||||||||||||||
ABR40522.1 | BVU_RS14525 | BVU_2880 | pflB | 2.3.1.54 | formate C-acetyltransferase | 34.666667 | 4.6666667 | 2 | 24.333333 | 11.333333 | 23 | 1.6666667 | 2 | 32 | 10 | 91.666667 | 0 | 3.3333333 | 32.333333 | formate acetyltransferase | |
Pyruvate -> Acetate | |||||||||||||||||||||
ABR41398.1 | BVU_RS18985 | BVU_3787 | nifJ | 1.2.7.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | 183.66667 | 26.666667 | 48 | 56.666667 | 17 | 109.33333 | 69 | 106.33333 | 67.333333 | 139 | 113 | 67.666667 | 43.666667 | 95.333333 | pyruvate-flavodoxin oxidoreductase | |
ABR38233.1 | BVU_RS02670 | BVU_0523 | pta | 2.3.1.8 | phosphate acetyltransferase | 13.666667 | 11.333333 | 24.333333 | 17 | 13 | 39.666667 | 10.333333 | 12.666667 | 0 | 28.666667 | 12.333333 | 20 | 15.333333 | 3.6666667 | ||
ABR38234.1 | BVU_RS02675 | BVU_0524 | ackA | 2.7.2.1 | acetate kinase | 17.333333 | 13.333333 | 29.333333 | 13.333333 | 13.333333 | 34.333333 | 15.666667 | 20.666667 | 5.6666667 | 29.333333 | 16 | 25.333333 | 20 | 6.6666667 | ||
Pyruvate -> Lactate -> Lactaldehyde | |||||||||||||||||||||
ABR40156.1 | BVU_RS12585 | BVU_2499 | ldh | 1.1.1.28 | 2-hydroxyacid dehydrogenase | 8.3333333 | 9.6666667 | 0 | 5 | 0 | 5 | 8.3333333 | 3.3333333 | 9.6666667 | 0 | 4 | 0 | 4.6666667 | 5.6666667 | ||
ABR39465.1 | BVU_RS09080 | BVU_1789 | aldA | 1.2.1.- | aldehyde dehydrogenase | 0 | 0 | 0 | 0 | 0 | 14 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | ||
Phosphoenolpyruvate -> Succinate | |||||||||||||||||||||
ABR38671.1 | BVU_RS04950 | BVU_0976 | pckA | 4.1.1.49 | phosphoenolpyruvate carboxykinase (ATP) | 194.33333 | 208.33333 | 125 | 274.66667 | 206.33333 | 93.333333 | 203.66667 | 201.33333 | 263 | 104 | 217 | 172.66667 | 184.66667 | 162 | phosphoenolpyruvate carboxykinase | |
ABR37978.1 | BVU_RS01300 | BVU_0256 | mdh | 1.1.1.37 | malate dehydrogenase | 120.66667 | 145.33333 | 67.333333 | 120.66667 | 154.33333 | 37.666667 | 100.66667 | 94.333333 | 113 | 60 | 125.33333 | 77.666667 | 101 | 69.666667 | ||
ABR38172.1 | BVU_RS02370 | BVU_0462 | mdh | 1.1.1.37 | malate dehydrogenase | 33.333333 | 36 | 42.666667 | 64.666667 | 47.333333 | 91.333333 | 50.333333 | 50.666667 | 40.333333 | 42.333333 | 32.333333 | 38.666667 | 44.666667 | 23.333333 | ||
ABR39534.1 | BVU_RS09420 | BVU_1859 | fumA/B | 4.2.1.2 | fumarate hydratase | 70.333333 | 70.666667 | 41 | 91.333333 | 56.666667 | 45.666667 | 66.333333 | 61.666667 | 77 | 26 | 59 | 57.666667 | 60.666667 | 43 | anaerobic fumarate hydratase class I | |
ABR38929.1 | BVU_RS06265 | BVU_1239 | FrdC | 0 | succinate dehydrogenase/fumarate reductase cytochrome b subunit | 28 | 15.666667 | 19.333333 | 14 | 16.333333 | 24 | 11.333333 | 10 | 23.666667 | 9 | 20 | 21.333333 | 15.333333 | 21.666667 | putative cytochrome B subunit | |
ABR38930.1 | BVU_RS06270 | BVU_1240 | FrdA | 1.3.5.1 | fumarate reductase/succinate dehydrogenase flavoprotein subunit | 131.33 | 80 | 73.333 | 130 | 120.67 | 130.67 | 95.333 | 103.67 | 130.67 | 47 | 114.67 | 51.333 | 57 | 98.333 | fumarate reductase flavoprotein subunit | |
ABR38931.1 | BVU_RS06275 | BVU_1241 | FrdB | 1.3.5.1 | succinate dehydrogenase/fumarate reductase iron-sulfur subunit | 26 | 22 | 20.667 | 53.333 | 35.333 | 16 | 22.667 | 19.667 | 23 | 21 | 24 | 23 | 20 | 13.667 | fumarate reductase iron-sulfur cluster protein subunit | |
Succinate -> Propionate | |||||||||||||||||||||
ABR38854.1 | BVU_RS05880 | BVU_1163 | scpC | 2.8.3.27 | propanoyl-CoA:succinate CoA transferase | 0.6667 | 0 | 7.6667 | 2.3333 | 2.3333 | 10.667 | 7 | 10.333 | 3 | 4.3333 | 2 | 6.6667 | 3.6667 | 0 | putative coenzyme A transferase | acetyl-CoA hydrolase/transferase family protein |
ABR38030.1 | BVU_RS01580 | BVU_0310 | scpA | 5.4.99.2 | methylmalonyl-CoA mutase | 34.667 | 3.6667 | 31.333 | 12.667 | 4 | 29.333 | 19 | 21.333 | 36 | 37.667 | 20.667 | 25 | 14.667 | 28 | methylmalonyl-CoA mutase large subunit | |
ABR40149.1 | BVU_RS12550 | BVU_2492 | mce | 5.1.99.1 | methylmalonyl-CoA epimerase | 9 | 11.333 | 5.6667 | 12 | 11.667 | 12 | 18.333 | 16.667 | 9.6667 | 9 | 7.6667 | 11.667 | 12.667 | 6.3333 | lactoyl gluthatione lyase | |
ABR40148.1 | BVU_RS12545 | BVU_2491 | MmdA | 0 | acyl-CoA carboxylase subunit beta | 28.333 | 8.3333 | 28 | 17.667 | 13.333 | 20.667 | 28.667 | 37 | 31 | 30 | 15.333 | 33 | 19 | 22.667 | propionyl-CoA carboxylase beta chain | |
ABR40736.1 | BVU_RS15640 | BVU_3102 | PccB | 0 | acyl-CoA carboxylase subunit beta | 27.667 | 28.333 | 9 | 29.667 | 38.333 | 16.333 | 26.333 | 22.333 | 16.333 | 8.3333 | 33.667 | 16.667 | 22.667 | 22 | propionyl-CoA carboxylase beta chain | |
α-Cyclodextrin -> Glucose | |||||||||||||||||||||
ABR39071.1 | BVU_RS06995 | BVU_1382 | susA | 3.2.1.54 | glycoside hydrolase family 13 protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.3333 | 0 | 0 | 0 | 0 | 0 | 6 | glycoside hydrolase family 13, candidate alpha-glycosidase | |
ABR39070.1 | BVU_RS06990 | BVU_1381 | susB | 3.2.1.3 | glycoside hydrolase family 97 | 0 | 0 | 0 | 0 | 0 | 8.667 | 0 | 20.333 | 0 | 0 | 0 | 0 | 0 | 53 | ||
ABR40671.1 | BVU_RS15290 | BVU_3034 | pulA | 3.2.1.41 | type I pullulanase | 6 | 0 | 0 | 0 | 0 | 4.333 | 0 | 0 | 4.667 | 0 | 2.333 | 0 | 2 | 6.3 | Blast: Pullulanase, 3.2.1.41 | |
ABR41177.1 | BVU_RS17875 | BVU_3559 | glgP | 2.4.1.1 | alpha-glucan family phosphorylase | 51.667 | 7.3333 | 30.333 | 19 | 4 | 52 | 25 | 34 | 59 | 81.667 | 45.333 | 18.333 | 16.333 | 44.333 | glycosyltransferase family 35, candidate alpha-glucan phosphorylase | |
ABR41415.1 | BVU_RS19070 | BVU_3804 | pgm | 5.4.2.2 | phospho-sugar mutase | 14 | 11.333 | 33.667 | 26.333 | 16.667 | 42.667 | 36.333 | 39 | 19.333 | 32.667 | 18.333 | 48.333 | 43 | 12.333 | putative phosphoglucomutase | |
Sucrose -> Glykolyse | |||||||||||||||||||||
ABR39344.1 | BVU_RS08455 | BVU_1663 | fruA | 0 | GH32 C-terminal domain-containing protein | 0 | 75.333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 24 | 0 | 0 | 0 | glycoside hydrolase family 32, candidate levanase | |
ABR39346.1 | BVU_RS08465 | BVU_1665 | scrK | 2.7.1.4 | carbohydrate kinase | 0 | 45 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.333333 | 34.666667 | 3 | 13.333333 | 0 | fructokinase | |
ABR37919.1 | BVU_RS00975 | BVU_0191 | NagC | 2.7.1.2 | ROK family protein | 24.666667 | 29 | 31.666667 | 36 | 22.333333 | 27.666667 | 44.333333 | 46.666667 | 33 | 42.666667 | 24 | 31 | 37 | 21.666667 | ROK family transcriptional repressor, with glucokinase domain | |
Mannose -> Glykolyse | |||||||||||||||||||||
ABR37919.1 | BVU_RS00975 | BVU_0191 | NagC | 2.7.1.2 | ROK family protein | 24.666667 | 29 | 31.666667 | 36 | 22.333333 | 27.666667 | 44.333333 | 46.666667 | 33 | 42.666667 | 24 | 31 | 37 | 21.666667 | ROK family transcriptional repressor, with glucokinase domain | |
ABR39379.1 | BVU_RS08655 | BVU_1703 | manA | 5.3.1.8 | class I mannose-6-phosphate isomerase | 10.666667 | 7.3333333 | 13.333333 | 13.666667 | 10.666667 | 9.3333333 | 17.333333 | 12.666667 | 13.666667 | 10 | 10.666667 | 11.666667 | 12 | 9.3333333 | mannose-6-phosphate isomerase | |
Lactose/Galactose -> Glykolyse | |||||||||||||||||||||
ABR38690.1 | BVU_RS05055 | BVU_0997 | lacZ | 3.2.1.23 | DUF4981 domain-containing protein | 7.3333333 | 0 | 10.666667 | 6 | 1.6666667 | 5.6666667 | 15.333333 | 16.666667 | 4.3333333 | 5 | 2.6666667 | 26.333333 | 6 | 4.6666667 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | glycoside hydrolase family 2 TIM barrel-domain |
ABR39986.1 | BVU_RS11705 | BVU_2327 | galM | 5.1.3.3 | galactose mutarotase | 0 | 2.3333333 | 5.3333333 | 6 | 3.3333333 | 8 | 8.3333333 | 9.3333333 | 4.3333333 | 9.6666667 | 0 | 8 | 5.3333333 | 2.3333333 | aldose 1-epimerase precursor [Phocaeicola vulgatus ATCC 8482] | |
ABR39984.1 | BVU_RS11695 | BVU_2325 | galK | 2.7.1.6 | galactokinase | 35.666667 | 29.666667 | 67.333333 | 51 | 33.666667 | 67.666667 | 96 | 88.333333 | 46 | 84.333333 | 21 | 80.333333 | 79.666667 | 32.333333 | ||
ABR40061.1 | BVU_RS19795 | BVU_3949 | rfbA | 2.7.7.24 | glucose-1-phosphate thymidylyltransferase RfbA | 1.3333 | 4 | 4.6667 | 9.3333 | 3.6667 | 8.3333 | 7.6667 | 7.3333 | 3 | 8.6667 | 1.3333 | 6.3333 | 5 | 1.6667 | ||
ABR41486.1 | BVU_RS19470 | BVU_3883 | galE | 5.1.3.2 | UDP-glucose 4-epimerase GalE | 26 | 30 | 40.333333 | 35 | 23 | 37.333333 | 41.666667 | 45 | 29.333333 | 50 | 25.666667 | 30.666667 | 35.666667 | 20.333333 | ||
ABR41415.1 | BVU_RS19070 | BVU_3804 | pgm | 5.4.2.2 | phospho-sugar mutase | 14 | 11.333333 | 33.666667 | 26.333333 | 16.666667 | 42.666667 | 36.333333 | 39 | 19.333333 | 32.666667 | 18.333333 | 48.333333 | 43 | 12.333333 | putative phosphoglucomutase [Phocaeicola vulgatus ATCC 8482] | |
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Accession | Locus | Locus_old | Name | EC_Number | Function-deposited genome | Glc | Gal | Frc | Man | Rha | Fuc | GluA | Ara | Xylo | Mal | Lac | Sac | aCyclo | Xyn | old name | newest name | ||||||||||||
Na+/H+ antiporter | |||||||||||||||||||||||||||||||||
ABR40856.1 | BVU_RS16245 | BVU_3227 | 0 | sodium:proton antiporter | |||||||||||||||||||||||||||||
ABR41507.1 | BVU_RS19570 | BVU_3904 | nhaA | 0 | Na+/H+ antiporter NhaA | ||||||||||||||||||||||||||||
ABR40689.1 | BVU_RS15380 | BVU_3052 | 0 | Na+/H+ antiporter NhaC family protein | |||||||||||||||||||||||||||||
specific Permeases/transporter | |||||||||||||||||||||||||||||||||
ABR37948.1 | BVU_RS01125 | BVU_0221 | fucP | 0 | L-fucose:H+ symporter permease | ||||||||||||||||||||||||||||
ABR39061.1 | BVU_RS06945 | BVU_1372 | L-fucose:H+ symporter permease | 0 | 0 | 0 | 0 | 0 | 11.667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6667 | ||||||||||||||||
ABR39985.1 | BVU_RS11700 | BVU_2326 | fucP | MFS transporter | glucose/galactose transporter [Phocaeicola vulgatus ATCC 8482] | ||||||||||||||||||||||||||||
ABR40261.1 | BVU_RS13120 | BVU_2606 | fucP | sugar MFS transporter | fucose permease [Phocaeicola vulgatus ATCC 8482] | ||||||||||||||||||||||||||||
ABR39040.1 | BVU_RS06840 | BVU_1351 | araJ | MFS transporter AraJ | putative transmembrane efflux protein | ||||||||||||||||||||||||||||
ABR38455.1 | BVU_RS03810 | BVU_0751 | araE | sugar porter family MFS transporter | |||||||||||||||||||||||||||||
ABR41675.1 | BVU_RS20420 | BVU_4073 | xylE | D-xylose transporter XylE | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.666667 | putative sugar-transport membrane protein [Phocaeicola vulgatus ATCC 8482] | ||||||||||||||
ABR40362.1 | BVU_RS13635 | BVU_2711 | lctP | L-lactate permease | |||||||||||||||||||||||||||||
ABR39075.1 | BVU_RS07015 | BVU_1386 | malY/T | MFS transporter | |||||||||||||||||||||||||||||
ABR39345.1 | BVU_RS08460 | BVU_1664 | MFS transporter | 0 | 0 | 2.6666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | putative sugar transport-related, membrane protein [Phocaeicola vulgatus ATCC 8482] | |||||||||||||||
ABR40406.1 | BVU_RS13870 | BVU_2756 | oligopeptide transporter, OPT family | ||||||||||||||||||||||||||||||
ABR41250.1 | BVU_RS18245 | BVU_3639 | MFS transporter | 0 | 0 | 0 | 0 | 1.6666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | putative sugar transporter [Phocaeicola vulgatus ATCC 8482] | |||||||||||||||
ABR41497.1 | BVU_RS19525 | BVU_3894 | MFS transporter | ||||||||||||||||||||||||||||||
ABR41721.1 | BVU_RS20650 | BVU_4119 | MFS transporter | ||||||||||||||||||||||||||||||
further transporter | |||||||||||||||||||||||||||||||||
ABR37923.1 | BVU_RS00995 | BVU_0195 | efflux RND transporter periplasmic adaptor subunit | 24.667 | 16.667 | 22 | 8.3333 | 9.3333 | 18.667 | 10 | 7.3333 | 28.667 | 13 | 28.333 | 9.3333 | 9.3333 | 26 | ||||||||||||||||
ABR37959.1 | BVU_RS01200 | BVU_0237 | efflux RND transporter permease subunit | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.3333 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR37960.1 | BVU_RS01205 | BVU_0238 | efflux RND transporter periplasmic adaptor subunit | 14.667 | 8.6667 | 14.667 | 6.6667 | 2.3333 | 23.333 | 3.6667 | 8 | 23.333 | 11.667 | 24.333 | 1.6667 | 5.3333 | 23.667 | ||||||||||||||||
ABR37964.1 | BVU_RS01225 | BVU_0242 | efflux transporter outer membrane subunit | 46 | 27 | 46.667 | 13.333 | 8.3333 | 23.333 | 20.333 | 25.333 | 27.333 | 9.3333 | 32.667 | 21.667 | 22.667 | 25.667 | ||||||||||||||||
ABR37965.1 | BVU_RS01230 | BVU_0243 | efflux RND transporter permease subunit | 7.3333 | 5.3333 | 6 | 9 | 3.6667 | 6.3333 | 9.6667 | 15.333 | 0 | 3.6667 | 5 | 14.667 | 8 | 4.3333 | ||||||||||||||||
ABR37966.1 | BVU_RS01235 | BVU_0244 | efflux RND transporter periplasmic adaptor subunit | 35.667 | 44 | 43 | 35 | 20 | 45 | 41.667 | 30.667 | 35.667 | 28.333 | 40 | 41.667 | 22.333 | 37.333 | ||||||||||||||||
ABR38027.1 | BVU_RS01565 | BVU_0307 | ATP-binding cassette domain-containing protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | ABC-F family ATP-binding cassette domain-containing protein | |||||||||||||||
ABR38028.1 | BVU_RS01570 | BVU_0308 | putative transporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5.3333 | 0 | 0 | 0 | 0 | 2 | 0 | ||||||||||||||||
ABR38037.1 | BVU_RS01615 | BVU_0317 | multidrug efflux RND transporter permease subunit | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | multidrug efflux RND transporter permease subunit | |||||||||||||||
ABR38038.1 | BVU_RS01620 | BVU_0318 | efflux RND transporter periplasmic adaptor subunit | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | efflux RND transporter periplasmic adaptor subunit | |||||||||||||||
ABR38039.1 | BVU_RS01625 | BVU_0319 | TolC family protein | 4.3333 | 0 | 2.3333 | 0 | 0 | 0 | 0 | 2.3333 | 0 | 0 | 0 | 0 | 1 | 0 | TolC family protein | |||||||||||||||
ABR38162.1 | BVU_RS02290 | BVU_0447 | LPS export ABC transporter ATP-binding protein | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR38164.1 | BVU_RS02300 | BVU_0449 | ABC transporter ATP-binding protein | 0 | 0 | 0 | 1 | 0 | 0.6667 | 0 | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR38185.1 | BVU_RS02435 | BVU_0475 | biopolymer transporter ExbD | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | ||||||||||||||||
ABR38763.1 | BVU_RS05425 | BVU_1072 | ABC transporter ATP-binding protein/permease | 3.3333 | 2.6667 | 2.3333 | 6.3333 | 1.6667 | 2.3333 | 5 | 5.3333 | 4 | 0 | 3.3333 | 5.3333 | 1.6667 | 0 | ABC transporter ATP-binding protein | |||||||||||||||
ABR39046.1 | BVU_RS06870 | BVU_1357 | Fe-S cluster assembly protein SufB | 5.6667 | 2.3333 | 5 | 4.6667 | 0 | 1.3333 | 1.3333 | 3 | 2.3333 | 3.3333 | 2 | 6 | 2 | 0 | ||||||||||||||||
ABR39047.1 | BVU_RS06875 | BVU_1358 | Fe-S cluster assembly ATPase SufC | 7.6667 | 8 | 7.6667 | 5.3333 | 4 | 1.3333 | 3 | 3.6667 | 7.3333 | 1 | 8.6667 | 5.3333 | 1.3333 | 0 | ||||||||||||||||
ABR39048.1 | BVU_RS06880 | BVU_1359 | Fe-S cluster assembly protein SufD | 5.6667 | 5.6667 | 9 | 3.3333 | 2.3333 | 1 | 0 | 6.6667 | 1.6667 | 4 | 4.3333 | 4.3333 | 3.6667 | 2 | ||||||||||||||||
ABR39177.1 | BVU_RS07545 | BVU_1490 | sodium-dependent transporter | 13.667 | 4.6667 | 9.6667 | 7.3333 | 1 | 4 | 4.6667 | 8.3333 | 11 | 5 | 7 | 3.3333 | 6.6667 | 15.667 | ||||||||||||||||
ABR39302.1 | BVU_RS08240 | BVU_1621 | ATP-binding cassette domain-containing protein | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39345.1 | BVU_RS08460 | BVU_1664 | MFS transporter | 0 | 0 | 2.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39472.1 | BVU_RS09115 | BVU_1796 | PTS sugar transporter subunit IIC | 0 | 0 | 0 | 0 | 1.6667 | 5 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 2.6667 | ||||||||||||||||
ABR39539.1 | BVU_RS09445 | BVU_1864 | efflux RND transporter periplasmic adaptor subunit | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39616.1 | BVU_RS09850 | BVU_1944 | biopolymer transporter ExbD | 43.667 | 46.333 | 49 | 35.333 | 32.333 | 44.333 | 42.667 | 29 | 52.667 | 28.667 | 40.333 | 35.333 | 30 | 39.667 | ||||||||||||||||
ABR39617.1 | BVU_RS09855 | BVU_1945 | biopolymer transporter ExbD | 93.333 | 74.667 | 67.667 | 86.333 | 52 | 69.667 | 82 | 86.333 | 81.667 | 81 | 94.333 | 101 | 63.667 | 85.333 | ||||||||||||||||
ABR39640.1 | BVU_RS09975 | BVU_1968 | ATP-binding protein | 0 | 4.6667 | 0 | 0 | 0.6667 | 0 | 1.6667 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | ||||||||||||||||
ABR39646.1 | BVU_RS10005 | BVU_1974 | OadG family protein | 3 | 6 | 0 | 5.3333 | 3.6667 | 10.667 | 2.3333 | 3.3333 | 9 | 12 | 14 | 0 | 2 | 16.333 | Blast: OadG family transporter subunit | |||||||||||||||
ABR39720.1 | BVU_RS10405 | BVU_2055 | ABC transporter substrate-binding protein | 0 | 1.3333 | 1.6667 | 0 | 0 | 0 | 2.6667 | 0 | 0 | 3.3333 | 2.3333 | 0 | 0 | 0 | ||||||||||||||||
ABR39982.1 | BVU_RS11685 | BVU_2323 | sodium:solute symporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 22.333 | 0 | 0 | 0 | 0 | 0 | 3.6667 | Solute:sodium symporter (SSS) family transporter | |||||||||||||||
ABR39990.1 | BVU_RS11725 | BVU_2331 | ATP-binding cassette domain-containing protein | 0 | 2.3333 | 1.3333 | 1.3333 | 0 | 1.3333 | 2 | 4.6667 | 0 | 0 | 0 | 5 | 0 | 0 | ||||||||||||||||
ABR40007.1 | BVU_RS11810 | BVU_2348 | FtsX-like permease family protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6667 | ||||||||||||||||
ABR40147.1 | BVU_RS12540 | BVU_2490 | OadG family protein | 4.3333 | 4.3333 | 3.3333 | 5.3333 | 2.6667 | 2.6667 | 3.6667 | 3.3333 | 2.3333 | 1.6667 | 5.6667 | 2 | 0 | 8.6667 | OadG family transporter subunit | |||||||||||||||
ABR40168.1 | BVU_RS12645 | BVU_2511 | ABC transporter ATP-binding protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 0 | 0 | ||||||||||||||||
ABR40685.1 | BVU_RS15360 | BVU_3048 | peptide MFS transporter | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR40746.1 | BVU_RS15690 | BVU_3112 | putative transporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 1.6667 | 0 | putative potassium uptake protein [Phocaeicola vulgatus ATCC 8482] | |||||||||||||||
ABR40801.1 | BVU_RS15980 | BVU_3169 | ABC transporter ATP-binding protein | 0 | 3 | 0 | 0 | 6 | 12.667 | 38.333 | 0 | 6.3333 | 4.6667 | 8.3333 | 0 | 1.6667 | 6.3333 | ||||||||||||||||
ABR40802.1 | BVU_RS15985 | BVU_3170 | FtsX-like permease family protein | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ABC transporter permease | |||||||||||||||
ABR40805.1 | BVU_RS16000 | BVU_3173 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 17.667 | 0 | 0 | 5.6667 | 3 | 11.667 | 0 | 0 | 8.3333 | HlyD family efflux transporter periplasmic adaptor subunit | |||||||||||||||
ABR41061.1 | BVU_RS17265 | BVU_3437 | ABC transporter ATP-binding protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR41250.1 | BVU_RS18245 | BVU_3639 | MFS transporter | 0 | 0 | 0 | 0 | 1.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | ||||||||||||||||
ABR41423.1 | BVU_RS19115 | BVU_3812 | putative sulfate exporter family transporter | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 1 | 0 | 0 | 0 | 0 | 0.6667 | 0 | D-xylose transporter XylE | |||||||||||||||
ABR41675.1 | BVU_RS20420 | BVU_4073 | D-xylose transporter XylE | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.667 | ||||||||||||||||
ABR41680.1 | BVU_RS20445 | BVU_4078 | efflux RND transporter periplasmic adaptor subunit | 3.6667 | 7.6667 | 1.6667 | 2.3333 | 0 | 0 | 4.3333 | 0 | 0 | 0 | 3.3333 | 3.3333 | 0 | 0 | ||||||||||||||||
ABR41726.1 | BVU_RS20675 | BVU_4124 | efflux RND transporter periplasmic adaptor subunit | 0 | 1.3333 | 0 | 0 | 1 | 11.333 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | ||||||||||||||||
ABR41727.1 | BVU_RS20680 | BVU_4125 | efflux RND transporter permease subunit | 0 | 1.6667 | 0 | 0 | 1.3333 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR37773.1 | BVU_RS00225 | BVU_0043 | glycoside-pentoside-hexuronide (GPH):cation symporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7.6667 | ||||||||||||||||
ABR39061.1 | BVU_RS06945 | BVU_1372 | L-fucose:H+ symporter permease | 0 | 0 | 0 | 0 | 0 | 11.667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.6667 | ||||||||||||||||
ABR40393.1 | BVU_RS13805 | BVU_2743 | potassium/proton antiporter | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 0 | ||||||||||||||||
ABR41205.1 | BVU_RS18035 | BVU_3592 | efflux RND transporter permease subunit | 0 | 0 | 1 | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Blast: Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter | |||||||||||||||
uptake protein | |||||||||||||||||||||||||||||||||
ABR37767.1 | BVU_RS00195 | BVU_0037 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 355.67 | ||||||||||||||||
ABR37855.1 | BVU_RS00635 | BVU_0125 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | ||||||||||||||||
ABR38108.1 | BVU_RS01985 | BVU_0390 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | ||||||||||||||||
ABR38202.1 | BVU_RS02520 | BVU_0492 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 8.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.667 | ||||||||||||||||
ABR38209.1 | BVU_RS02555 | BVU_0499 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 38.667 | ||||||||||||||||
ABR38216.1 | BVU_RS02585 | BVU_0506 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 11.667 | 55.667 | 0 | 0 | 7.6667 | 20.667 | 15.333 | 0 | 0 | 32.333 | ||||||||||||||||
ABR38293.1 | BVU_RS02970 | BVU_0585 | TonB-dependent receptor | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6667 | Blast: SusC/RagA family TonB-linked outer membrane protein | RagB/SusD family nutrient uptake outer membrane protein | ||||||||||||||
ABR38539.1 | BVU_RS04275 | BVU_0842 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ||||||||||||||||
ABR38546.1 | BVU_RS04310 | BVU_0849 | PepSY domain-containing protein | 4 | 0 | 0.6667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7.3333 | 0 | 0 | PepSY-associated TM helix domain-containing protein | |||||||||||||||
ABR38642.1 | BVU_RS04810 | BVU_0947 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.3333 | ||||||||||||||||
ABR38655.1 | BVU_RS04875 | BVU_0960 | RagB/SusD family nutrient uptake outer membrane protein | 9.3333 | 23.333 | 1.3333 | 6.6667 | 26.667 | 39.667 | 13.333 | 1.3333 | 30.667 | 42 | 53 | 0.6667 | 0 | 70.667 | ||||||||||||||||
ABR38774.1 | BVU_RS05480 | BVU_1083 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR38849.1 | BVU_RS05855 | BVU_1158 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 4 | ||||||||||||||||
ABR39068.1 | BVU_RS06980 | BVU_1379 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 121.33 | 0 | 0 | 63.667 | 0 | 0 | 103.67 | 3 | ||||||||||||||||
ABR39515.1 | BVU_RS09325 | BVU_1840 | RagB/SusD family nutrient uptake outer membrane protein | 22.333 | 35.333 | 24.333 | 21 | 13.333 | 8.3333 | 51.667 | 9.6667 | 36.667 | 30 | 41.333 | 27.333 | 15.667 | 35.333 | ||||||||||||||||
ABR39519.1 | BVU_RS09345 | BVU_1844 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||||||
ABR39523.1 | BVU_RS09365 | BVU_1848 | RagB/SusD family nutrient uptake outer membrane protein | 11.667 | 5.3333 | 11.667 | 0 | 1 | 0 | 5 | 8.6667 | 2.3333 | 0 | 0 | 3.3333 | 7 | 0 | ||||||||||||||||
ABR39528.1 | BVU_RS09390 | BVU_1853 | RagB/SusD family nutrient uptake outer membrane protein | 11 | 21.333 | 11.667 | 6.3333 | 0 | 5 | 8.3333 | 10 | 3.3333 | 0 | 5.6667 | 6.6667 | 10 | 5.6667 | ||||||||||||||||
ABR39530.1 | BVU_RS09400 | BVU_1855 | RagB/SusD family nutrient uptake outer membrane protein | 66 | 23.333 | 65 | 29.333 | 33 | 49 | 53.333 | 46.667 | 30.333 | 13.667 | 39.333 | 50.333 | 49.667 | 64 | ||||||||||||||||
ABR39651.1 | BVU_RS09520 | BVU_1879 | YraN family protein | 0 | 2 | 1.6667 | 0 | 5.3333 | 7.6667 | 0 | 2.6667 | 0 | 0 | 0 | 1.3333 | 0 | 4 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||||||
ABR39684.1 | BVU_RS10225 | BVU_2017 | transcriptional repressor | 0 | 0 | 2 | 0 | 0 | 1.6667 | 0 | 1.3333 | 1 | 2.6667 | 1.6667 | 0 | 2.6667 | 2 | putative iron uptake regulation protein [Phocaeicola vulgatus ATCC 8482] | Blast: Peroxide-responsive repressor PerR | ||||||||||||||
ABR40087.1 | BVU_RS12230 | BVU_2428 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 0 | 0 | ||||||||||||||||
ABR40099.1 | BVU_RS12290 | BVU_2441 | TrkA family potassium uptake protein | 0 | 5 | 0 | 0 | 0 | 0 | 5 | 5.6667 | 0 | 4.3333 | 0 | 3.6667 | 0 | 0 | ||||||||||||||||
ABR40208.1 | BVU_RS12845 | BVU_2551 | RagB/SusD family nutrient uptake outer membrane protein | 2 | 0 | 0 | 0 | 0 | 0 | 2.3333 | 1.6667 | 0 | 0 | 0 | 1.6667 | 1.3333 | 0 |
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Accession | Locus | Locus_old | Name | EC_Number | Function-deposited genome | Glc | Gal | Frc | Man | Rha | Fuc | GluA | Ara | Xylo | Mal | Lac | Sac | aCyclo | Xyn | old name | newest name | info | |||||||
SusC | |||||||||||||||||||||||||||||
ABR38269.1 | BVU_RS02850 | BVU_0561 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 39.666667 | 128.66667 | 1 | 0 | 28 | 0 | 40.333333 | 0 | 0 | 20 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR38271.1 | BVU_RS02860 | BVU_0563 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 34.666667 | 19 | 67.666667 | 43.333333 | 154.66667 | 166.33333 | 66 | 23 | 141 | 139.66667 | 142.33333 | 25 | 24.333333 | 118.33333 | SusC/RagA family TonB-linked outer membrane | |||||||||||
ABR38276.1 | BVU_RS02885 | BVU_0568 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 7 | 0 | 0 | 6.3333333 | 45.666667 | 283 | 0 | 0 | 29 | 16.333333 | 58.666667 | 0 | 0 | 37.666667 | SusC/RagA family TonB-linked outer membrane | |||||||||||
ABR38279.1 | BVU_RS02900 | BVU_0571 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 28.666667 | 25.666667 | 39.333333 | 11 | 118.33333 | 170.66667 | 20.333333 | 19.333333 | 75 | 49.333333 | 120.66667 | 21.666667 | 30.666667 | 133.33333 | SusC/RagA family TonB-linked outer membrane | |||||||||||
ABR38327.1 | BVU_RS03140 | BVU_0619 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 13 | 16.666667 | 2 | 14.333333 | 80.333333 | 65.333333 | 0 | 0 | 46.666667 | 38.333333 | 38.333333 | 0 | 0 | 52.666667 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR37897.1 | BVU_RS00870 | BVU_0169 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6666667 | 22.333333 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR38210.1 | BVU_RS02560 | BVU_0500 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 163 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR37768.1 | BVU_RS00200 | BVU_0038 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 20.666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 942.66667 | SusC/RagA family protein | TonB-dependent receptor | ||||||||||
ABR39652.1 | BVU_RS10035 | BVU_1980 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 3 | 0 | 5 | 0 | 8 | 21 | 0 | 0 | 6 | 1 | 2 | 0 | 0 | 8 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR40207.1 | BVU_RS12840 | BVU_2550 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 11 | 8 | 19 | 9 | 7 | 0 | 14 | 10 | 18 | 0 | 15 | 12 | 11 | 16 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR40233.1 | BVU_RS12975 | BVU_2578 | TonB-dependent receptor | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20.667 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR38293.1 | BVU_RS02970 | BVU_0585 | TonB-dependent receptor | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6667 | Blast: SusC/RagA family TonB-linked outer membrane protein | RagB/SusD family nutrient uptake outer membrane protein | ||||||||||
ABR38548.1 | BVU_RS04320 | BVU_0851 | putative TonB-linked outer membrane receptor [Phocaeicola vulgatus ATCC 8482] | 51.333333 | 4.6666667 | 17 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 57.333333 | 0 | 0 | ||||||||||||
ABR39023.1 | BVU_RS06755 | BVU_1334 | putative TonB-dependent receptor [Phocaeicola vulgatus ATCC 8482] | 11.333333 | 12.333333 | 12 | 7 | 6.6666667 | 6.6666667 | 7.6666667 | 7.6666667 | 7.3333333 | 3.6666667 | 7.6666667 | 7.3333333 | 8.3333333 | 6.6666667 | ||||||||||||
ABR39710.1 | BVU_RS10350 | BVU_2045 | putative TonB-dependent outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 3 | 15 | 0 | 7.3333333 | 0 | 0 | 1.3333333 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR40378.1 | BVU_RS13725 | BVU_2728 | TonB-dependent outer membrane receptor [Phocaeicola vulgatus ATCC 8482] | 107.33333 | 44 | 56.333333 | 15 | 0 | 0 | 1.3333333 | 11.666667 | 22.333333 | 2.6666667 | 0 | 55 | 9 | 0 | ||||||||||||
ABR40726.1 | BVU_RS15590 | BVU_3092 | putative TonB-dependent outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 71.333333 | 40.666667 | 79.666667 | 41.666667 | 34 | 69 | 45.666667 | 45 | 71.333333 | 33.333333 | 60 | 37.666667 | 45 | 51.333333 | ||||||||||||
ABR40729.1 | BVU_RS15605 | BVU_3095 | TonB-dependent outer membrane receptor [Phocaeicola vulgatus ATCC 8482] | 12.333333 | 5.6666667 | 8 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 22.333333 | 0 | 0 | ||||||||||||
ABR40742.1 | BVU_RS15675 | BVU_3108 | TonB-dependent receptor [Phocaeicola vulgatus ATCC 8482] | 27 | 17.666667 | 23.333333 | 9 | 0 | 10.666667 | 4 | 18 | 13.333333 | 6 | 12.666667 | 12.666667 | 15 | 16 | ||||||||||||
ABR38215.1 | BVU_RS02580 | BVU_0505 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 3 | 0 | 0 | 31.333333 | 103.33333 | 0 | 0 | 33.333333 | 26.666667 | 37.666667 | 0 | 0 | 75 | TonB-dependent receptor | |||||||||||
ABR38538.1 | BVU_RS04270 | BVU_0841 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11 | TonB-dependent receptor | |||||||||||
ABR38641.1 | BVU_RS04805 | BVU_0946 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 24.333333 | 26.333333 | 0 | 0 | 30.666667 | 16.333333 | 48.333333 | 0 | 0 | 71 | TonB-dependent receptor | |||||||||||
ABR38654.1 | BVU_RS04870 | BVU_0959 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 56 | 82 | 33.666667 | 0 | 137 | 258.33333 | 15 | 23.333333 | 215 | 202.66667 | 292.33333 | 1.3333333 | 27 | 393 | TonB-dependent receptor | |||||||||||
ABR41311.1 | BVU_RS18560 | BVU_3700 | putative outer membrane protein [Phocaeicola vulgatus ATCC 8482] | 9.3333333 | 0 | 2.3333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR41321.1 | BVU_RS18605 | BVU_3710 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 40 | 0 | 0 | 0 | 0 | 219 | 0 | 0 | 0 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR40359.1 | BVU_RS13620 | BVU_2708 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 16 | 3 | 7 | 2 | 0 | 0 | 0 | 2 | 5 | 0 | 4 | 10 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR40344.1 | BVU_RS13540 | BVU_2692 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 33 | 1 | 18 | 6 | 0 | 0 | 19 | 29 | 19 | 0 | 4 | 7 | 6 | 0 | TonB-dependent receptor | |||||||||||
ABR40342.1 | BVU_RS13530 | BVU_2690 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 15 | TonB-dependent receptor | |||||||||||
ABR40091.1 | BVU_RS12245 | BVU_2432 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 10 | 13 | 0 | 0 | 13 | 6 | 8 | 0 | 0 | 5 | TonB-dependent receptor | |||||||||||
ABR39387.1 | BVU_RS08690 | BVU_1711 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 26 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 7 | TonB-dependent receptor | |||||||||||
ABR39343.1 | BVU_RS08450 | BVU_1662 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 92 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 24 | 0 | 0 | TonB-dependent receptor | |||||||||||
ABR38203.1 | BVU_RS02525 | BVU_0493 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 7 | 54 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 63 | TonB-dependent receptor | |||||||||||
ABR38107.1 | BVU_RS01980 | BVU_0389 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 40 | TonB-dependent receptor | |||||||||||
ABR37856.1 | BVU_RS00640 | BVU_0126 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 11 | 21 | 0 | 0 | 6 | 5 | 12 | 0 | 0 | 20 | TonB-dependent receptor | |||||||||||
ABR41747.1 | BVU_RS20780 | BVU_4145 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 107.33333 | 50.666667 | 36.666667 | 21.333333 | 16.333333 | 4.3333333 | 9 | 22 | 71.333333 | 12 | 31.333333 | 8 | 13.666667 | 3 | TonB-dependent receptor | |||||||||||
ABR38773.1 | BVU_RS05475 | BVU_1082 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 5.3333333 | 4.6666667 | 0 | 0 | 0 | 0 | 3.3333333 | 0 | 0 | 11.333333 | TonB-dependent receptor | |||||||||||
ABR38848.1 | BVU_RS05850 | BVU_1157 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 3.6666667 | 0 | 0 | 15 | TonB-dependent receptor | |||||||||||
ABR39069.1 | BVU_RS06985 | BVU_1380 | outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 1 | 0 | 0 | 0 | 0 | 0 | 200 | 0 | 0 | 75 | 1.3333333 | 0 | 222 | 21 | TonB-dependent receptor | |||||||||||
ABR39516.1 | BVU_RS09330 | BVU_1841 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 59.333333 | 57.333333 | 94.666667 | 52.333333 | 62.333333 | 46.666667 | 130 | 42.666667 | 98.333333 | 48 | 87.333333 | 79.666667 | 63.333333 | 96.333333 | TonB-dependent receptor | |||||||||||
ABR39518.1 | BVU_RS09340 | BVU_1843 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 16 | 11.333333 | 14 | 7 | 1.6666667 | 20 | 16 | 4.3333333 | 4.6666667 | 0 | 8 | 8 | 4.6666667 | 0 | TonB-dependent receptor | |||||||||||
ABR39522.1 | BVU_RS09360 | BVU_1847 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 37 | 7 | 33.666667 | 6.6666667 | 2.3333333 | 10.666667 | 14.333333 | 21.333333 | 12.666667 | 0 | 3.6666667 | 12 | 18 | 0 | TonB-dependent receptor | |||||||||||
ABR39527.1 | BVU_RS09385 | BVU_1852 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 50.666667 | 58.333333 | 60.666667 | 29.333333 | 15 | 44.666667 | 51.333333 | 26.666667 | 37 | 12.333333 | 30.666667 | 35 | 53.333333 | 53.333333 | TonB-dependent receptor | |||||||||||
ABR39529.1 | BVU_RS09395 | BVU_1854 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 277.33333 | 85 | 342 | 118 | 134.33333 | 178.33333 | 214.66667 | 168.33333 | 167.66667 | 54.666667 | 176 | 230.33333 | 234 | 265.66667 | TonB-dependent receptor | |||||||||||
SusD | |||||||||||||||||||||||||||||
ABR37767.1 | BVU_RS00195 | BVU_0037 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 355.67 | ||||||||||||
ABR37855.1 | BVU_RS00635 | BVU_0125 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.3333 | ||||||||||||
ABR38108.1 | BVU_RS01985 | BVU_0390 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | ||||||||||||
ABR38202.1 | BVU_RS02520 | BVU_0492 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 8.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10.667 | ||||||||||||
ABR38209.1 | BVU_RS02555 | BVU_0499 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 38.667 | ||||||||||||
ABR38216.1 | BVU_RS02585 | BVU_0506 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 11.667 | 55.667 | 0 | 0 | 7.6667 | 20.667 | 15.333 | 0 | 0 | 32.333 | ||||||||||||
ABR38539.1 | BVU_RS04275 | BVU_0842 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | ||||||||||||
ABR38642.1 | BVU_RS04810 | BVU_0947 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.3333 | ||||||||||||
ABR38655.1 | BVU_RS04875 | BVU_0960 | RagB/SusD family nutrient uptake outer membrane protein | 9.3333 | 23.333 | 1.3333 | 6.6667 | 26.667 | 39.667 | 13.333 | 1.3333 | 30.667 | 42 | 53 | 0.6667 | 0 | 70.667 | ||||||||||||
ABR38774.1 | BVU_RS05480 | BVU_1083 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 1.3333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR39068.1 | BVU_RS06980 | BVU_1379 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 121.33 | 0 | 0 | 63.667 | 0 | 0 | 103.67 | 3 | ||||||||||||
ABR39515.1 | BVU_RS09325 | BVU_1840 | RagB/SusD family nutrient uptake outer membrane protein | 22.333 | 35.333 | 24.333 | 21 | 13.333 | 8.3333 | 51.667 | 9.6667 | 36.667 | 30 | 41.333 | 27.333 | 15.667 | 35.333 | ||||||||||||
ABR39519.1 | BVU_RS09345 | BVU_1844 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR39523.1 | BVU_RS09365 | BVU_1848 | RagB/SusD family nutrient uptake outer membrane protein | 11.667 | 5.3333 | 11.667 | 0 | 1 | 0 | 5 | 8.6667 | 2.3333 | 0 | 0 | 3.3333 | 7 | 0 | ||||||||||||
ABR39528.1 | BVU_RS09390 | BVU_1853 | RagB/SusD family nutrient uptake outer membrane protein | 11 | 21.333 | 11.667 | 6.3333 | 0 | 5 | 8.3333 | 10 | 3.3333 | 0 | 5.6667 | 6.6667 | 10 | 5.6667 | ||||||||||||
ABR39530.1 | BVU_RS09400 | BVU_1855 | RagB/SusD family nutrient uptake outer membrane protein | 66 | 23.333 | 65 | 29.333 | 33 | 49 | 53.333 | 46.667 | 30.333 | 13.667 | 39.333 | 50.333 | 49.667 | 64 | ||||||||||||
ABR40087.1 | BVU_RS12230 | BVU_2428 | RagB/SusD family nutrient uptake outer membrane protein | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.6667 | 0 | 0 | 0 | ||||||||||||
ABR40345.1 | BVU_RS13545 | BVU_2693 | RagB/SusD family nutrient uptake outer membrane protein | 14.333 | 0 | 6.3333 | 6 | 0 | 0 | 9.6667 | 11 | 4 | 1.6667 | 4 | 4 | 3 | 0 | ||||||||||||
ABR38642.1 | BVU_RS04810 | BVU_0947 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 1.3333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.3333333 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR38655.1 | BVU_RS04875 | BVU_0960 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 9.3333333 | 23.333333 | 1.3333333 | 6.6666667 | 26.666667 | 39.666667 | 13.333333 | 1.3333333 | 30.666667 | 42 | 53 | 0.6666667 | 0 | 70.666667 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR38293.1 | BVU_RS02970 | BVU_0585 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6.6666667 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR39068.1 | BVU_RS06980 | BVU_1379 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 121.33333 | 0 | 0 | 63.666667 | 0 | 0 | 103.66667 | 3 | RagB/SusD family nutrient uptake outer membrane protein | |||||||||||
ABR41746.1 | BVU_RS20775 | BVU_4144 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 51.666667 | 29.666667 | 21.333333 | 17 | 6.3333333 | 2.6666667 | 6.6666667 | 19.333333 | 30.333333 | 10.333333 | 22.666667 | 8.3333333 | 9.6666667 | 1.3333333 | SusD family outer membrane lipoprotein NanU | |||||||||||
ABR38270.1 | BVU_RS02855 | BVU_0562 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 6 | 7 | 10 | 12 | 54 | 44 | 19 | 3 | 27 | 51 | 32 | 7 | 8 | 28 | SusD/RagB family nutrient-binding outer membrane lipoprotein | |||||||||||
ABR38277.1 | BVU_RS02890 | BVU_0569 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 5 | 69 | 3 | 0 | 1 | 0 | 7 | 0 | 0 | 3 | SusD/RagB family nutrient-binding outer membrane | |||||||||||
ABR38280.1 | BVU_RS02905 | BVU_0572 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 5 | 5 | 9 | 3 | 55 | 62 | 19 | 3 | 9 | 25 | 32 | 3 | 4 | 34 | SusD/RagB family nutrient-binding outer membrane | |||||||||||
ABR38326.1 | BVU_RS03135 | BVU_0618 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 3 | 4 | 0 | 3 | 12 | 9 | 0 | 0 | 8 | 11 | 8 | 0 | 0 | 8 | SusD/RagB family nutrient-binding outer membrane lipoprotein | |||||||||||
ABR38745.1 | BVU_RS05335 | BVU_1054 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 23 | 30 | 0 | 0 | 34 | SusC/RagA family TonB-linked outer membrane protein | |||||||||||
ABR39688.1 | BVU_RS10245 | BVU_2021 | conserved hypothetical protein [Phocaeicola vulgatus ATCC 8482] | 0 | 7 | 7 | 7 | 26 | 8 | 23 | 2 | 17 | 36 | 30 | 10 | 5 | 31 | SusD/RagB family nutrient-binding outer membrane lipoprotein | |||||||||||
ABR40090.1 | BVU_RS12240 | BVU_2431 | putative outer membrane protein, probably involved in nutrient binding [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 6 | 6 | 2 | 0 | 4 | 12 | 6 | 0 | 0 | 3 | SusD family outer membrane lipoprotein NanU | |||||||||||
TonB | |||||||||||||||||||||||||||||
ABR39611.1 | BVU_RS09820 | BVU_1938 | outer membrane protein TonB [Phocaeicola vulgatus ATCC 8482] | 38 | 31 | 34 | 28 | 31.333333 | 37.333333 | 29.666667 | 28.666667 | 39.666667 | 36.333333 | 41 | 23.666667 | 29.666667 | 37.666667 | ||||||||||||
SusE | |||||||||||||||||||||||||||||
ABR39067.1 | BVU_RS06975 | BVU_1378 | hypothetical protein BVU_1378 [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 38 | 0 | 0 | 17 | 0 | 0 | 40 | 0 | SusE domain-containing protein | |||||||||||
GH family | |||||||||||||||||||||||||||||
ABR41736.1 | BVU_RS20725 | BVU_4134 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 3.6666667 | 3 | 0 | 7 | 4.6666667 | 7 | 0 | 2.3333333 | 4 | 4.3333333 | 0 | 0 | 3.6666667 | ||||||||||||
ABR39444.1 | BVU_RS08985 | BVU_1768 | glycoside hydrolase family 2, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0.6666667 | 1.3333333 | 3.3333333 | 0 | 0 | 1 | 1.3333333 | 1.3333333 | 1.3333333 | 1.6666667 | 0.6666667 | 0 | ||||||||||||
ABR38315.1 | BVU_RS03080 | BVU_0607 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 2.6666667 | 0 | 0 | 15 | 31.666667 | 11 | 2 | 9.3333333 | 5.3333333 | 8.3333333 | 0 | 0 | 19.666667 | ||||||||||||
ABR38111.1 | BVU_RS02000 | BVU_0393 | glycoside hydrolase family 2, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 2.3333333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | ||||||||||||
ABR38690.1 | BVU_RS05055 | BVU_0997 | glycoside hydrolase family 2, candidate beta-galactosidase [Phocaeicola vulgatus ATCC 8482] | 1.6666667 | 6 | 0 | 4.3333333 | 5 | 10.666667 | 5.6666667 | 7.3333333 | 6 | 16.666667 | 15.333333 | 2.6666667 | 4.6666667 | 26.333333 | ||||||||||||
ABR37861.1 | BVU_RS00665 | BVU_0131 | glycoside hydrolase family 3, candidate beta-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR37771.1 | BVU_RS00215 | BVU_0041 | glycoside hydrolase family 10, candidate beta-xylanase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40.666667 | ||||||||||||
ABR39071.1 | BVU_RS06995 | BVU_1382 | glycoside hydrolase family 13, candidate alpha-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4.3333333 | 0 | 0 | 6 | 0 | ||||||||||||
ABR40671.1 | BVU_RS15290 | BVU_3034 | glycoside hydrolase family 13, candidate pullulanase [Phocaeicola vulgatus ATCC 8482] | 1.3333333 | 0 | 0 | 4.6666667 | 0 | 0 | 4.3333333 | 6 | 2 | 0 | 0 | 2.3333333 | 6.3333333 | 0 | ||||||||||||
ABR41594.1 | BVU_RS20000 | BVU_3991 | glycoside hydrolase family 13, candidate alpha-glycosidase [Phocaeicola vulgatus ATCC 8482] | 0 | 0 | 0 | 1.6666667 | 1.6666667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||||||||||||
ABR38325.1 | BVU_RS03130 | BVU_0617 | glycoside hydrolase family 18 [Phocaeicola vulgatus ATCC 8482] | 1.3333333 | 4 | 0 | 1.3333333 | 10.666667 | 13.666667 | 0 | 0 | 6.3333333 | 9.3333333 | 5.3333333 | 0 | 0 | 9 | ||||||||||||
ABR41738.1 | BVU_RS20735 | BVU_4136 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 1.6666667 | 1 | 0 | 0 | 2.3333333 | 0 | 0 | 2 | 0 | 0 | 3.3333333 | 0 | 0 | 1.3333333 | ||||||||||||
ABR41740.1 | BVU_RS20745 | BVU_4138 | glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase [Phocaeicola vulgatus ATCC 8482] | 6.6666667 | 20.333333 | 7 | 27 | 50.333333 | 41 | 22.333333 | 18.666667 | 29.333333 | 24.666667 | 35.333333 | 9.3333333 | 15.666667 | 32.666667 |
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Glucose | Fructose | Galactose | Xylose | Mannose | Rhamnose | |||||||||||||||||||||||||||||||
time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | |||||||||||||||||||
4.58 | 0.15 | 1.1203333333333333E9 | 4 | 0.09 | 521000000 | 6.67 | 0.25 | 1580000000 | 6.17 | 0.19000000000000128 | 2.4486666666666665E9 | 5.17 | 0.21 | 1390000000 | 5.42 | 0.1 | 772000000 | |||||||||||||||||||
6.58 | 0.41 | 3.448E9 | 6.58 | 0.33 | 2000000000 | 7.92 | 0.35 | 2.78E9 | 7.83 | 0.41999999999999815 | 5.276666666666667E9 | 6.83 | 0.4 | 2.91E9 | 9.33 | 0.19 | 1670000000 | |||||||||||||||||||
7.67 | 0.61 | 5.814666666666667E9 | 7.58 | 0.48 | 3.8E9 | 9.42 | 0.58 | 5.17E9 | 9.08 | 0.609999999999992 | 8.04E9 | 7.67 | 0.58 | 4.26E9 | 11.5 | 0.31 | 2.83E9 | |||||||||||||||||||
growth rate | 0.14653709911646146 | 1.4753118171577477E9 | growth rate | 0.10576960650228594 | 8.476925481614628E8 | growth rate | 0.12109890109890109 | 1.314945054945055E9 | growth rate | 0.14402246171653502 | 1.909826740287706E9 | growth rate | 0.14329845951066805 | 1.1154337260070848E9 | growth rate | 0.03316339965662163 | 3.2549005150675696E8 | |||||||||||||||||||
doubling time/ generation time | 1.6023768675864378 | 1.3265166808559152 | doubling time/ generation time | 1.5695576883849747 | 1.219405465139072 | doubling time/ generation time | 2.299508468353846 | 1.6057437936192966 | doubling time/ generation time | 1.833804417892819 | 1.7508905006046354 | doubling time/ generation time | 1.6861384493209302 | 1.5441012175668787 | doubling time/ generation time | 3.673275824080056 | 3.2027771253260533 | |||||||||||||||||||
Arabinose | Lactose | Maltose | Sucrose | α-Cyclodextrin | Xylan | |||||||||||||||||||||||||||||||
time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | |||||||||||||||||||
5 | 0.1783333333333322 | 1.9893333333333333E9 | 7.08 | 0.14 | 1370000000 | 7.83 | 0.22 | 1990000000 | 6.58 | 0.24 | 1680000000 | 6.25 | 0.23 | 1700000000 | 5.33 | 0.1183333333333314 | 1349000000 | |||||||||||||||||||
5.92 | 0.2600000000000084 | 2.86E9 | 8.92 | 0.27 | 2.71E9 | 9.75 | 0.35 | 3.27E9 | 8 | 0.41 | 3.18E9 | 7.25 | 0.36 | 2.92E9 | 8.17 | 0.21333333333333573 | 3.4333333333333335E9 | |||||||||||||||||||
7.33 | 0.6033333333333187 | 5.46E9 | 9.75 | 0.32 | 3.47E9 | 12.33 | 0.72 | 5.16E9 | 8.83 | 0.5 | 4.48E9 | 8.33 | 0.53 | 5.61E9 | 10.58 | 0.27999999999999137 | 4.746666666666667E9 | |||||||||||||||||||
growth rate | 0.18751159732474265 | 1.5191890343764875E9 | growth rate | 0.06795258582216115 | 7.768534552011E8 | growth rate | 0.11290891974582257 | 7.060092570800973E8 | growth rate | 0.11600453152758824 | 1.2241561317232678E9 | growth rate | 0.14440611138491863 | 1.8879374075899456E9 | growth rate | 0.030871958979506266 | 6.49731152953215E8 | |||||||||||||||||||
doubling time/ generation time | 1.3924958103650102 | 1.6225556756447983 | doubling time/ generation time | 2.522269109716189 | 2.0627877094170746 | doubling time/ generation time | 2.658788689052177 | 3.2912588920949433 | doubling time/ generation time | 2.2872828359078397 | 1.6037173911119764 | doubling time/ generation time | 1.7365594339264263 | 1.2117891070480173 | doubling time/ generation time | 4.569426893646702 | 3.3856732885052536 | |||||||||||||||||||
Fucose | Glucuronicacid | |||||||||||||||||||||||||||||||||||
time[h] | CDW [g/L] | TCC [1/mL] | time[h] | CDW [g/L] | TCC [1/mL] | |||||||||||||||||||||||||||||||
4.75 | 0.05499999999999764 | 1.1123333333333333E9 | 17.75 | 0.10499999999999954 | 2.9586666666666665E9 | |||||||||||||||||||||||||||||||
10 | 0.08333333333333155 | 1.7913333333333333E9 | 25.5 | 0.19000000000000128 | 4.396666666666667E9 | |||||||||||||||||||||||||||||||
15.83 | 0.13166666666666696 | 2.4306666666666665E9 | 34.5 | 0.256666666666668 | 5.72E9 | |||||||||||||||||||||||||||||||
growth rate | 0.006944527332683249 | 1.1881216391833381E8 | growth rate | 0.009010771815396881 | 1.643802747307046E8 | |||||||||||||||||||||||||||||||
doubling time/ generation time | 8.79670954762365 | 10.234054194448232 | doubling time/ generation time | 14.26320029368587 | 18.294106352487354 | |||||||||||||||||||||||||||||||
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GlcA | 3.5859293165199695 | 3.279120629095239 | GlcA | 0.5976548860866616 | 0.5465201048492064 | |||||||||||||||||||||||||||||||||||||||||
3/4ODmax | ||||||||||||||||||||||||||||||||||||||||||||||
ATP Gain | per depleted substrate [mM/mM] | C-normalized [mM/mM] | ||||||||||||||||||||||||||||||||||||||||||||
Total ATP (3.3) | Total ATP (4.3) | Total ATP (3.3) | Total ATP (4.3) | |||||||||||||||||||||||||||||||||||||||||||
Glc | 1.906015927776227 | 1.774901765852951 | Glc | 0.3176693212960378 | 0.2958169609754918 | |||||||||||||||||||||||||||||||||||||||||
Gal | 1.6677784857958446 | 1.5782229156594552 | Gal | 0.2779630809659741 | 0.2630371526099092 | |||||||||||||||||||||||||||||||||||||||||
Fru | 2.34222805856802 | 2.1840828249697197 | Fru | 0.39037134309467003 | 0.36401380416161994 | |||||||||||||||||||||||||||||||||||||||||
Man | 2.1437729572490922 | 1.999450887326591 | Man | 0.3572954928748487 | 0.33324181455443186 | |||||||||||||||||||||||||||||||||||||||||
Ara | 1.8697861721747329 | 1.7341154834831127 | Ara | 0.37395723443494655 | 0.34682309669662253 | |||||||||||||||||||||||||||||||||||||||||
Xyl | 1.7613582808130452 | 1.6322181738817456 | Xyl | 0.352271656162609 | 0.32644363477634913 | |||||||||||||||||||||||||||||||||||||||||
Rha | 1.158305774701776 | 1.0685420386701607 | Rha | 0.193050962450296 | 0.1780903397783601 | |||||||||||||||||||||||||||||||||||||||||
Fuc | 1.7066100005092009 | 1.6325352849364845 | Fuc | 0.28443500008486683 | 0.2720892141560807 | |||||||||||||||||||||||||||||||||||||||||
Mal | 2.9673704508645886 | 2.779461932717458 | Mal | 0.2472808709053824 | 0.23162182772645482 | |||||||||||||||||||||||||||||||||||||||||
Suc | 6.061175796222336 | 5.6529736434990046 | Suc | 0.5050979830185279 | 0.4710811369582504 | |||||||||||||||||||||||||||||||||||||||||
Lac | 5.1798931414692 | 4.826533100026266 | Lac | 0.4316577617891 | 0.4022110916688555 | |||||||||||||||||||||||||||||||||||||||||
Cyclo | 14.55674898996765 | 13.669487128116167 | Cyclo | 0.4043541386102125 | 0.3797079757810046 | |||||||||||||||||||||||||||||||||||||||||
Xylan | 19.93338540850525 | 18.68803560117603 | Xylan | 0.5695252973858642 | 0.5339438743193151 | |||||||||||||||||||||||||||||||||||||||||
GlcA | 3.6711330364424435 | 3.3571712685570536 | GlcA | 0.6118555060737406 | 0.559528544759509 | |||||||||||||||||||||||||||||||||||||||||
ODmax | ||||||||||||||||||||||||||||||||||||||||||||||
ATP Gain | per depleted substrate [mM/mM] | C-normalized [mM/mM] | ||||||||||||||||||||||||||||||||||||||||||||
Total ATP (3.3) | Total ATP (4.3) | Total ATP (3.3) | Total ATP (4.3) | |||||||||||||||||||||||||||||||||||||||||||
Glc | 2.058436514568929 | 1.9143300569970159 | Glc | 0.3430727524281549 | 0.31905500949950266 | |||||||||||||||||||||||||||||||||||||||||
Gal | 1.733280437667709 | 1.6143842539601152 | Gal | 0.28888007294461815 | 0.26906404232668585 | |||||||||||||||||||||||||||||||||||||||||
Fru | 2.256625415574675 | 2.1008993016405944 | Fru | 0.3761042359291125 | 0.35014988360676574 | |||||||||||||||||||||||||||||||||||||||||
Man | 1.94086872204939 | 1.8102064751604066 | Man | 0.32347812034156503 | 0.3017010791934011 | |||||||||||||||||||||||||||||||||||||||||
Ara | 2.109705490529653 | 1.9565800280058034 | Ara | 0.42194109810593056 | 0.3913160056011607 | |||||||||||||||||||||||||||||||||||||||||
Xyl | 1.9128810311664717 | 1.7712606121045242 | Xyl | 0.38257620623329436 | 0.35425212242090487 | |||||||||||||||||||||||||||||||||||||||||
Rha | 1.2499252835222852 | 1.1521296903990024 | Rha | 0.20832088058704754 | 0.1920216150665004 | |||||||||||||||||||||||||||||||||||||||||
Fuc | 1.8610538857841121 | 1.7683119821056128 | Fuc | 0.31017564763068534 | 0.2947186636842688 | |||||||||||||||||||||||||||||||||||||||||
Mal | 3.477202420621062 | 3.250586691862324 | Mal | 0.2897668683850885 | 0.2708822243218603 | |||||||||||||||||||||||||||||||||||||||||
Suc | 5.4559858025957215 | 5.085825126557946 | Suc | 0.4546654835496435 | 0.42381876054649553 | |||||||||||||||||||||||||||||||||||||||||
Lac | 4.6269772795387905 | 4.300016583632907 | Lac | 0.38558143996156585 | 0.35833471530274225 | |||||||||||||||||||||||||||||||||||||||||
Cyclo | 16.462068276463523 | 15.467067360557596 | Cyclo | 0.457279674346209 | 0.4296407600154888 | |||||||||||||||||||||||||||||||||||||||||
Xylan | 19.772224413581405 | 18.713414239186722 | Xylan | 0.5649206975308972 | 0.5346689782624777 | |||||||||||||||||||||||||||||||||||||||||
GlcA | 3.3684948774258316 | 3.082075374335567 | GlcA | 0.5614158129043053 | 0.5136792290559279 |
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End concentration (ODmax) | Succinate | Propanoate | Acetate | Formate | Propane-1,2-diol | ||||||||||||||||||||||||
Substrate | Starting concentration | Mol | OD | CDW [g/L] | Succinate | Propanoate | Acetate | Formiate | 1,2PD | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | product yield | Substrate | Sum Product per Substrate | Sum Product per Substrate | Sum Product per Substrate | |
[mM] | [g/mol] | time [h] | ODmax | ODmax | [mM] | [mM] | [mM] | [mM] | [mM] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | [mM/mMsubstrat] | [g/gsubstrate] | [g/gcells] | ||
Glucose | 14,07 | 180,16 | 9,67 | 1,81 | 0,89 | 5,49 | 0,13 | 7,16 | 2,31 | - | 0,39 | 0,26 | 0,73 | 0,01 | 0,006 | 0,02 | 0,51 | 0,33 | 0,95 | 0,16 | 0,11 | 0,20 | - | - | - | Glucose | 1072 | 0,703 | 1893 |
Fructose | 14,38 | 180,16 | 8,92 | 1,69 | 0,73 | 5,21 | 0,03 | 6,07 | 1,94 | - | 0,36 | 0,24 | 0,84 | 0,002 | 0,001 | 0,01 | 0,42 | 0,28 | 0,98 | 0,14 | 0,09 | 0,20 | - | - | - | Fructose | 0,922 | 0,604 | 2032 |
Galactose | 14,20 | 180,16 | 10,58 | 2,10 | 0,87 | 4,46 | 0,15 | 5,58 | 1,86 | - | 0,31 | 0,21 | 0,60 | 0,01 | 0,004 | 0,01 | 0,39 | 0,13 | 0,39 | 0,13 | 0,06 | 0,16 | - | - | - | Galactose | 0,849 | 0,396 | 1166 |
Xylose | 16,61 | 150,13 | 10,42 | 1,84 | 0,67 | 6,01 | 0,37 | 5,59 | 0,02 | - | 0,36 | 0,28 | 1,06 | 0,02 | 0,017 | 0,06 | 0,34 | 0,26 | 0,99 | 0,001 | 0,001 | 0,002 | - | - | - | Xylose | 0,722 | 0,568 | 2112 |
Mannose | 13,91 | 180,16 | 8,83 | 1,93 | 0,84 | 4,78 | 0,08 | 5,75 | 2,11 | - | 0,34 | 0,22 | 0,67 | 0,01 | 0,004 | 0,01 | 0,41 | 0,27 | 0,81 | 0,15 | 0,10 | 0,19 | - | - | - | Mannose | 0,914 | 0,599 | 1682 |
Rhamnose | 10,97 | 164,16 | 15,75 | 0,63 | 0,38 | 0,32 | 0,01 | 5,50 | 0,330 | 11,28 | 0,03 | 0,02 | 0,10 | 0,00 | 0,000 | 0,00 | 0,50 | 0,36 | 1,71 | 0,030 | 0,022 | 0,066 | 1028 | 0,476 | 2258 | Rhamnose | 1589 | 0,880 | 4135 |
Arabinose | 16,09 | 150,13 | 8,50 | 1,63 | 0,71 | 5,48 | 0,00 | 6,76 | 1,74 | - | 0,34 | 0,27 | 0,91 | 0,00 | 0,000 | 0,00 | 0,42 | 0,33 | 1,12 | 0,11 | 0,09 | 0,19 | - | - | - | Arabinose | 0,869 | 0,684 | 2223 |
Lactose | 6,93 | 342,30 | 12,33 | 1,45 | 0,62 | 4,72 | 0,55 | 4,57 | 0,37 | - | 0,68 | 0,24 | 0,90 | 0,08 | 0,027 | 0,10 | 0,66 | 0,23 | 0,87 | 0,05 | 0,02 | 0,05 | - | - | - | Lactose | 1473 | 0,508 | 1918 |
Maltose | 7,22 | 342,30 | 15,08 | 2,13 | 0,89 | 4,02 | 0,59 | 4,18 | 0,21 | - | 0,56 | 0,19 | 0,53 | 0,08 | 0,028 | 0,08 | 0,58 | 0,20 | 0,55 | 0,03 | 0,01 | 0,02 | - | - | - | Maltose | 1246 | 0,430 | 1184 |
Saccharose | 7,16 | 342,30 | 11,00 | 1,79 | 0,68 | 6,20 | 0,00 | 7,22 | 2,61 | - | 0,86 | 0,30 | 1,08 | 0,00 | 0,00 | 0,00 | 1,01 | 0,35 | 1,25 | 0,36 | 0,13 | 0,29 | - | - | - | Saccharose | 2237 | 0,772 | 2622 |
α-Cyclodextrin | 2,50 | 972,84 | 9,00 | 1,96 | 0,67 | 4,74 | 0,31 | 4,71 | 1,18 | - | 1,90 | 0,23 | 0,84 | 0,12 | 0,015 | 0,05 | 1,88 | 0,23 | 0,83 | 0,47 | 0,06 | 0,13 | - | - | - | α-Cyclodextrin | 4376 | 0,531 | 1854 |
Xylan | 2,66 | 892,00 | 16,92 | 0,83 | 0,37 | 2,69 | 1,35 | 5,65 | 3,64 | - | 1,01 | 0,13 | 0,86 | 0,51 | 0,067 | 0,43 | 2,13 | 0,28 | 1,80 | 1,37 | 0,18 | 0,75 | - | - | - | Xylan | 5014 | 0,664 | 3844 |
Fucose | 13,30 | 164,16 | 22,00 | 0,38 | 0,16 | 2,00 | 0,23 | 4,07 | 0,21 | 5,36 | 0,15 | 0,11 | 1,48 | 0,02 | 0,01 | 0,17 | 0,31 | 0,22 | 3,01 | 0,02 | 0,01 | 0,10 | 0,403 | 0,187 | 2550 | Fucose | 0,894 | 0,540 | 7306 |
Glucuronicacid | 15,00 | 194,14 | 49,00 | 0,84 | 0,45 | 0,47 | 0,15 | 14,07 | 0,00 | - | 0,03 | 0,02 | 0,12 | 0,01 | 0,01 | 0,04 | 0,94 | 0,57 | 3,69 | 0,00 | 0,00 | 0,00 | - | - | - | Glucuronicacid | 0,979 | 0,595 | 3853 |
CDW | TCC | ||||||||||||||||||||||||||||
Substrate | Starting concentration | Mol | OD | CDW [g/L] | TCC [1/mL] | doubling time | generation time | division rate | biomass-specific growth rate | cell count-specific growth rate | biomass yield | biomass yield | space time yield | Substrate | |||||||||||||||
[mM] | [g/mol] | Zeit [h] | 1/4ODmax | Zeit [h] | 1/2ODmax | Zeit [h] | 3/4ODmax | Zeit [h] | ODmax | 1/4ODmax | 1/2ODmax | 3/4ODmax | ODmax | 1/4ODmax | 1/2ODmax | 3/4ODmax | ODmax | [h] | [h] | [1/h] | [g/(L*h)] | [1/(mL*h)] | [g/mMsubstrate] | [g/gsubstrate] | [g/(L*h)] | ||||
Glucose | 14,07 | 180,16 | 4,58 | 0,36 | 6,58 | 0,92 | 7,67 | 1,29 | 9,67 | 1,81 | 0,15 | 0,41 | 0,61 | 0,89 | 1,12E+09 | 3,45E+09 | 5,81E+09 | 7,71E+09 | 1,60 | 1,33 | 0,75 | 0,15 | 1,48E+09 | 0,06 | 0,35 | 0,09 | Glucose | ||
Fructose | 14,38 | 180,16 | 4,00 | 0,27 | 6,58 | 0,84 | 7,58 | 1,21 | 8,92 | 1,69 | 0,09 | 0,33 | 0,48 | 0,73 | 5,21E+08 | 2,00E+09 | 3,80E+09 | 7,05E+09 | 1,57 | 1,22 | 0,82 | 0,11 | 8,48E+08 | 0,05 | 0,28 | 0,08 | Fructose | ||
Galactose | 14,20 | 180,16 | 6,67 | 0,49 | 7,92 | 0,89 | 9,42 | 1,49 | 11,42 | 1,96 | 0,25 | 0,35 | 0,58 | 0,87 | 1,58E+09 | 2,78E+09 | 5,17E+09 | 5,96E+09 | 2,30 | 1,61 | 0,62 | 0,12 | 1,31E+09 | 0,06 | 0,34 | 0,08 | Galactose | ||
Xylose | 16,61 | 150,13 | 6,17 | 0,50 | 7,83 | 0,96 | 9,08 | 1,43 | 10,42 | 1,84 | 0,19 | 0,42 | 0,61 | 0,76 | 2,45E+09 | 5,28E+09 | 8,04E+09 | 8,35E+09 | 1,83 | 1,75 | 0,57 | 0,14 | 1,91E+09 | 0,05 | 0,30 | 0,07 | Xylose | ||
Mannose | 13,91 | 180,16 | 5,17 | 0,47 | 6,83 | 1,03 | 7,67 | 1,47 | 8,83 | 1,93 | 0,21 | 0,40 | 0,56 | 0,84 | 1,39E+09 | 2,91E+09 | 4,26E+09 | 6,83E+09 | 1,69 | 1,54 | 0,65 | 0,14 | 1,12E+09 | 0,06 | 0,34 | 0,10 | Mannose | ||
Rhamnose | 10,97 | 164,16 | 5,42 | 0,19 | 9,33 | 0,37 | 11,50 | 0,53 | 15,75 | 0,63 | 0,10 | 0,19 | 0,31 | 0,38 | 7,72E+08 | 1,67E+09 | 2,83E+09 | 4,28E+09 | 3,67 | 3,20 | 0,31 | 0,03 | 3,25E+08 | 0,03 | 0,21 | 0,02 | Rhamnose | ||
Arabinose | 16,09 | 150,13 | 5,00 | 0,50 | 5,92 | 0,80 | 7,33 | 1,37 | 8,50 | 1,63 | 0,18 | 0,26 | 0,60 | 0,69 | 1,99E+09 | 2,86E+09 | 5,46E+09 | 7,01E+09 | 1,39 | 1,62 | 0,62 | 0,19 | 1,52E+09 | 0,04 | 0,29 | 0,08 | Arabinose | ||
Lactose | 6,93 | 342,30 | 7,08 | 0,35 | 8,92 | 0,76 | 9,75 | 0,97 | 12,33 | 1,45 | 0,14 | 0,27 | 0,32 | 0,62 | 1,37E+09 | 2,71E+09 | 3,47E+09 | 6,60E+09 | 2,52 | 2,06 | 0,49 | 0,07 | 7,77E+08 | 0,09 | 0,26 | 0,05 | Lactose | ||
Maltose | 7,22 | 342,30 | 7,83 | 0,52 | 9,75 | 0,89 | 12,33 | 1,65 | 15,08 | 2,13 | 0,22 | 0,35 | 0,72 | 0,89 | 1,99E+09 | 3,27E+09 | 5,16E+09 | 6,30E+09 | 2,66 | 3,29 | 0,30 | 0,11 | 7,06E+08 | 0,12 | 0,36 | 0,06 | Maltose | ||
Saccharose | 7,16 | 342,30 | 6,58 | 0,55 | 8,00 | 1,10 | 8,83 | 1,33 | 11,00 | 1,79 | 0,24 | 0,41 | 0,50 | 0,68 | 1,68E+09 | 3,18E+09 | 4,48E+09 | 6,39E+09 | 2,29 | 1,60 | 0,63 | 0,12 | 1,22E+09 | 0,09 | 0,28 | 0,06 | Saccharose | ||
α-Cyclodextrin | 2,50 | 972,84 | 6,25 | 0,62 | 7,25 | 1,07 | 8,33 | 1,72 | 9,00 | 1,96 | 0,23 | 0,36 | 0,53 | 0,67 | 1,70E+09 | 2,92E+09 | 5,61E+09 | 5,94E+09 | 1,74 | 1,21 | 0,83 | 0,14 | 1,89E+09 | 0,27 | 0,28 | 0,07 | α-Cyclodextrin | ||
Xylan | 2,66 | 892,00 | 5,33 | 0,21 | 8,17 | 0,44 | 10,58 | 0,60 | 16,92 | 0,83 | 0,12 | 0,21 | 0,28 | 0,37 | 1,35E+09 | 3,43E+09 | 4,75E+09 | 7,88E+09 | 4,57 | 3,39 | 0,29 | 0,03 | 6,50E+08 | 0,14 | 0,16 | 0,02 | Xylan | ||
Fucose | 13,30 | 164,16 | 4,75 | 0,11 | 10,00 | 0,21 | 15,83 | 0,30 | 22,00 | 0,38 | 0,05 | 0,08 | 0,13 | 0,16 | 1,11E+09 | 1,79E+09 | 2,43E+09 | 7,30E+09 | 8,80 | 10,23 | 0,10 | 0,01 | 1,19E+08 | 0,01 | 0,07 | 0,01 | Fucose | ||
Glucuronicacid | 15,00 | 194,14 | 17,75 | 0,22 | 25,50 | 0,40 | 34,50 | 0,61 | 49,00 | 0,84 | 0,11 | 0,19 | 0,26 | 0,45 | 2,96E+09 | 4,40E+09 | 5,72E+09 | 9,45E+09 | 14,26 | 18,29 | 0,05 | 0,01 | 1,64E+08 | 0,03 | 0,15 | 0,01 | Glucuronicacid | ||